Seawater carbonate chemistry and genomics variation of Arbacia lixula individuals living across a natural pH gradient in Canary Islands

Our study explores genomic signs of adaptation in A. lixula to different water pH conditions. To achieve this, we analysed the genomics variation of A. lixula individuals living across a natural pH gradient in Canary Islands, Spain. We use a 2b-RADseq protocol with 74 samples from sites with varying pH levels (from 7.3 to 7.9 during low tide) and included a control site. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Mendeley Data (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-28.

Data and Resources

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Cite this as

González-Delgado, Sara, Perez-Portela, Rocío, Ortega-Martínez, Olga, Alfonso, Beatriz, Pereyra, Ricardo T, Hernandez, Jose Carlos (2024). Dataset: Seawater carbonate chemistry and genomics variation of Arbacia lixula individuals living across a natural pH gradient in Canary Islands. https://doi.org/10.1594/PANGAEA.973723

DOI retrieved: 2024

Additional Info

Field Value
Imported on November 29, 2024
Last update November 29, 2024
License CC-BY-4.0
Source https://doi.pangaea.de/10.1594/PANGAEA.973723
Author González-Delgado, Sara
Given Name Sara
Family Name González-Delgado
More Authors
Perez-Portela, Rocío
Ortega-Martínez, Olga
Alfonso, Beatriz
Pereyra, Ricardo T
Hernandez, Jose Carlos
Source Creation 2024
Publication Year 2024
Resource Type text/tab-separated-values - filename: Gonzalez-Delgado-etal_2024_MPB
Subject Areas
Name: BiologicalClassification

Name: Biosphere

Name: Chemistry

Name: Ecology

Name: Oceans

Related Identifiers
Title: Genomic signals of adaptation to a natural CO2 gradient over a striking microgeographic scale
Identifier: https://doi.org/10.1016/j.marpolbul.2024.117225
Type: DOI
Relation: References
Year: 2024
Source: Marine Pollution Bulletin
Authors: González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , Nisumaa Anne-Marin , Pesant Stephane , Bellerby Richard G J , Delille Bruno , Middelburg Jack J , Orr James C , Riebesell Ulf , Tyrrell Toby , Wolf-Gladrow Dieter A , Gattuso Jean-Pierre , Yang Yan , Brockmann Patrick , Galdino Carolina , Schindler Uwe , Gazeau Frédéric , Yang Yan , Hansson L , Gattuso Jean-Pierre , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James , Gentili Bernard , Hagens Mathilde , Hofmann Andreas , Mueller Jens-Daniel , Proye Aurélien , Rae James , Soetaert Karline .

Title: Datasets for genomic signals of adaptation along a natural CO2 gradient over striking microgeographic scale
Identifier: https://doi.org/10.17632/9PHF69MT8D.1
Type: DOI
Relation: References
Year: 2024
Source: Mendeley Data
Authors: González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , Nisumaa Anne-Marin , Pesant Stephane , Bellerby Richard G J , Delille Bruno , Middelburg Jack J , Orr James C , Riebesell Ulf , Tyrrell Toby , Wolf-Gladrow Dieter A , Gattuso Jean-Pierre , Yang Yan , Brockmann Patrick , Galdino Carolina , Schindler Uwe , Gazeau Frédéric , Yang Yan , Hansson L , Gattuso Jean-Pierre , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James , Gentili Bernard , Hagens Mathilde , Hofmann Andreas , Mueller Jens-Daniel , Proye Aurélien , Rae James , Soetaert Karline .

Title: EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification
Identifier: https://doi.org/10.5194/essd-2-167-2010
Type: DOI
Relation: References
Year: 2010
Source: Earth System Science Data
Authors: González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , Nisumaa Anne-Marin , Pesant Stephane , Bellerby Richard G J , Delille Bruno , Middelburg Jack J , Orr James C , Riebesell Ulf , Tyrrell Toby , Wolf-Gladrow Dieter A , Gattuso Jean-Pierre , Yang Yan , Brockmann Patrick , Galdino Carolina , Schindler Uwe , Gazeau Frédéric , Yang Yan , Hansson L , Gattuso Jean-Pierre , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James , Gentili Bernard , Hagens Mathilde , Hofmann Andreas , Mueller Jens-Daniel , Proye Aurélien , Rae James , Soetaert Karline .

Title: An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal
Identifier: https://doi.org/10.5194/essd-16-3771-2024
Type: DOI
Relation: References
Year: 2024
Source: Earth System Science Data
Authors: González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , Nisumaa Anne-Marin , Pesant Stephane , Bellerby Richard G J , Delille Bruno , Middelburg Jack J , Orr James C , Riebesell Ulf , Tyrrell Toby , Wolf-Gladrow Dieter A , Gattuso Jean-Pierre , Yang Yan , Brockmann Patrick , Galdino Carolina , Schindler Uwe , Gazeau Frédéric , Yang Yan , Hansson L , Gattuso Jean-Pierre , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James , Gentili Bernard , Hagens Mathilde , Hofmann Andreas , Mueller Jens-Daniel , Proye Aurélien , Rae James , Soetaert Karline .

Title: Data compilation on the biological response to ocean acidification: an update
Identifier: https://doi.org/10.5194/essd-8-79-2016
Type: DOI
Relation: References
Year: 2016
Source: Earth System Science Data
Authors: González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , Nisumaa Anne-Marin , Pesant Stephane , Bellerby Richard G J , Delille Bruno , Middelburg Jack J , Orr James C , Riebesell Ulf , Tyrrell Toby , Wolf-Gladrow Dieter A , Gattuso Jean-Pierre , Yang Yan , Brockmann Patrick , Galdino Carolina , Schindler Uwe , Gazeau Frédéric , Yang Yan , Hansson L , Gattuso Jean-Pierre , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James , Gentili Bernard , Hagens Mathilde , Hofmann Andreas , Mueller Jens-Daniel , Proye Aurélien , Rae James , Soetaert Karline .

Title: seacarb: seawater carbonate chemistry with R. R package version 3.3.3
Identifier: https://cran.r-project.org/web/packages/seacarb/index.html
Type: DOI
Relation: References
Year: 2024
Authors: González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , González-Delgado Sara , Pérez-Portela Rocío , Ortega-Martínez Olga , Alfonso Beatriz , Pereyra Ricardo T , Hernández José Carlos , Nisumaa Anne-Marin , Pesant Stephane , Bellerby Richard G J , Delille Bruno , Middelburg Jack J , Orr James C , Riebesell Ulf , Tyrrell Toby , Wolf-Gladrow Dieter A , Gattuso Jean-Pierre , Yang Yan , Brockmann Patrick , Galdino Carolina , Schindler Uwe , Gazeau Frédéric , Yang Yan , Hansson L , Gattuso Jean-Pierre , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James , Gentili Bernard , Hagens Mathilde , Hofmann Andreas , Mueller Jens-Daniel , Proye Aurélien , Rae James , Soetaert Karline .