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Mass spectrometry for semi-experimental protein structure determination and m...
The dataset used for semi-experimental protein structure determination and modeling using mass spectrometry. -
Protein Structure Data from PDB
The dataset used in this study is a collection of protein structure data from the Protein Data Bank (PDB), which is used to infer the interactions between protein subunits. -
EMPIAR-10028
The dataset used in this paper for contrast estimation and image denoising in cryo-electron microscopy. -
Synthetic datasets for ab-initio cryo-EM reconstruction
Synthetic datasets for ab-initio cryo-EM reconstruction -
SE(3) Diffusion Model Dataset
The dataset used for training and testing the SE(3) diffusion model. -
Protein Data Bank
The Protein Data Bank contains 13,308 complexes of ligands bound to target proteins with structures determined by X-ray crystallography. -
SCOPe dataset
Structural Classification of Proteins — extended (SCOPe) dataset -
PSI-BLAST dataset
The PSI-BLAST dataset contains protein structures obtained from a PSI-BLAST search using RAS sequences. This set was generated to test the ability of neural networks to classify... -
KRAS-HRAS dataset
The KRAS-HRAS dataset contains protein structures belonging to the KRAS and HRAS subfamilies of RAS. There is a total of 233 structures, 77 and 156 belonging to KRAS and HRAS... -
Impact of protein conformational diversity on alphafold predictions
Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational... -
Fold-switching proteins and ligand-induced conformational change
Fold-switching proteins and ligand-induced conformational change. -
EIGENFOLD: Generative Protein Structure Prediction with Diffusion Models
Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational... -
SKEMPI2 dataset
The dataset used in the paper for predicting mutational effects on protein-protein binding. -
RAbD Benchmark
The RAbD dataset is a benchmark for antibody design, which is used to evaluate the performance of the proposed dyMEAN model. -
Structural Antibody Database (SAbDab)
The Structural Antibody Database (SAbDab) is a dataset of antibody structures, which is used for training and testing the proposed dyMEAN model. -
CASP12 dataset
The CASP12 dataset is a benchmark for protein structure prediction. -
ProteinNet dataset
The ProteinNet dataset is a standardized data set for machine learning of protein structure.
