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  "author": "Zhang, J",
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  "author": "Zhang, J",
            
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  "author_email": "",
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  "author_email": "",
            
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  "citation": [],
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  "citation": [],
            
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            
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  "doi": "10.1594/PANGAEA.945242",
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  "doi": "10.1594/PANGAEA.945242",
            
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  "doi_date_published": "2022",
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  "doi_date_published": "2022",
            
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  "doi_publisher": "",
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  "doi_publisher": "",
            
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  "doi_status": "True",
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  "doi_status": "True",
            
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  "extra_authors": [
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  "extra_authors": [
            
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    {
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    {
            
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      "extra_author": "Yang, Q",
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      "extra_author": "Yang, Q",
            
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      "familyName": "Yang",
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      "familyName": "Yang",
            
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      "givenName": "Q",
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      "givenName": "Q",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    {
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    {
            
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      "extra_author": "Liu, Q",
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      "extra_author": "Liu, Q",
            
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      "familyName": "Liu",
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      "familyName": "Liu",
            
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      "givenName": "Q",
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      "givenName": "Q",
            
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      "orcid": "0000-0002-3616-351X"
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      "orcid": "0000-0002-3616-351X"
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Liu, S",
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      "extra_author": "Liu, S",
            
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      "familyName": "Liu",
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      "familyName": "Liu",
            
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      "givenName": "S",
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      "givenName": "S",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Zhu, Yue",
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      "extra_author": "Zhu, Yue",
            
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      "familyName": "Zhu",
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      "familyName": "Zhu",
            
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      "givenName": "Yue",
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      "givenName": "Yue",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Yao, Jiang",
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      "extra_author": "Yao, Jiang",
            
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      "familyName": "Yao",
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      "familyName": "Yao",
            
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      "givenName": "Jiang",
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      "givenName": "Jiang",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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      "extra_author": "Wang, Hong",
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      "extra_author": "Wang, Hong",
            
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      "familyName": "Wang",
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      "familyName": "Wang",
            
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      "givenName": "Hong",
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      "orcid": ""
            
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    },
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    {
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    {
            
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      "extra_author": "Guan, WanChun",
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      "extra_author": "Guan, WanChun",
            
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      "familyName": "Guan",
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      "familyName": "Guan",
            
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      "givenName": "WanChun",
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      "givenName": "WanChun",
            
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      "orcid": "0000-0003-0427-9320"
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      "orcid": "0000-0003-0427-9320"
            
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    }
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    }
            
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  ],
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  ],
            
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  "familyName": "Zhang",
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  "familyName": "Zhang",
            
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  "givenName": "J",
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  "givenName": "J",
            
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  "groups": [],
            
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  "license_id": "CC-BY-4.0",
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  "license_id": "CC-BY-4.0",
            
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  "license_title": "CC-BY-4.0",
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  "license_title": "CC-BY-4.0",
            
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  "metadata_created": "2024-11-29T11:46:57.289479",
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  "metadata_created": "2024-11-29T11:46:57.289479",
            
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  "metadata_modified": "2024-11-29T11:46:57.289485",
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  "metadata_modified": "2024-11-30T11:54:01.212996",
            
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  "name": "png-doi-10-1594-pangaea-945242",
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  "name": "png-doi-10-1594-pangaea-945242",
            
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  "notes": "The HAB-forming, toxic dinoflagellate Karenia mikimotoi, 
64
  "notes": "The HAB-forming, toxic dinoflagellate Karenia mikimotoi, 
            
65
previously found to benefit from ocean acidification (OA), was 
65
previously found to benefit from ocean acidification (OA), was 
            
66
cultivated to investigate its transcriptional response to simulated OA 
66
cultivated to investigate its transcriptional response to simulated OA 
            
67
for 30 generations. Batch cultures were grown under two CO2 
67
for 30 generations. Batch cultures were grown under two CO2 
            
68
concentrations, 450 (control) and 1100 (simulated OA) \u03bcatm, and 
68
concentrations, 450 (control) and 1100 (simulated OA) \u03bcatm, and 
            
69
physiological parameters [growth, pigments, catalase (CAT), 
69
physiological parameters [growth, pigments, catalase (CAT), 
            
70
glutathione reductase (GR), and superoxide dismutase (SOD) activity], 
70
glutathione reductase (GR), and superoxide dismutase (SOD) activity], 
            
71
as well as transcriptomes (obtained via RNA-seq), were compared. 
71
as well as transcriptomes (obtained via RNA-seq), were compared. 
            
72
Chlorophyll a (Chl a) and carotenoid (Caro) contents, as well as CAT 
72
Chlorophyll a (Chl a) and carotenoid (Caro) contents, as well as CAT 
            
73
and GR activities, were significantly increased under OA conditions. 
73
and GR activities, were significantly increased under OA conditions. 
            
74
Transcriptomic analysis revealed 2,490 differentially expressed 
74
Transcriptomic analysis revealed 2,490 differentially expressed 
            
75
unigenes in response to OA, which comprised 1.54% of all unigenes. A 
75
unigenes in response to OA, which comprised 1.54% of all unigenes. A 
            
76
total of 1,121 unigenes were upregulated, and 1,369 unigenes were 
76
total of 1,121 unigenes were upregulated, and 1,369 unigenes were 
            
77
downregulated in OA compared to control conditions. The downregulated 
77
downregulated in OA compared to control conditions. The downregulated 
            
78
expression of bicarbonate transporter and carbonic anhydrase genes was 
78
expression of bicarbonate transporter and carbonic anhydrase genes was 
            
79
a landmark of OA acclimation. Key genes involved in energy metabolism, 
79
a landmark of OA acclimation. Key genes involved in energy metabolism, 
            
80
e.g., photosynthesis, tricarboxylic acid cycle, oxidative 
80
e.g., photosynthesis, tricarboxylic acid cycle, oxidative 
            
81
phosphorylation, and nitrogen metabolism, were highly upregulated 
81
phosphorylation, and nitrogen metabolism, were highly upregulated 
            
82
under OA, contributing to increases in the Chl a (55.05%) and Caro 
82
under OA, contributing to increases in the Chl a (55.05%) and Caro 
            
83
(28.37%). The enhanced antioxidant enzyme activities (i.e. CAT, GR) 
83
(28.37%). The enhanced antioxidant enzyme activities (i.e. CAT, GR) 
            
84
and upregulated genes (i.e. glutathione peroxidase, ascorbate 
84
and upregulated genes (i.e. glutathione peroxidase, ascorbate 
            
85
peroxidase, heat shock protein, 20S proteasome, aldehyde 
85
peroxidase, heat shock protein, 20S proteasome, aldehyde 
            
86
dehydrogenase, and apolipoprotein) benefit cells against the potential 
86
dehydrogenase, and apolipoprotein) benefit cells against the potential 
            
87
lower pH stress condition under OA. In addition, the downregulation of 
87
lower pH stress condition under OA. In addition, the downregulation of 
            
88
four genes associated with motility suggested that the preserved 
88
four genes associated with motility suggested that the preserved 
            
89
energy could further boost growth. In conclusion, the present study 
89
energy could further boost growth. In conclusion, the present study 
            
90
suggests that K. mikimotoi exhibits efficient gene expression 
90
suggests that K. mikimotoi exhibits efficient gene expression 
            
91
regulation for the utilization of energy and resistance to OA-induced 
91
regulation for the utilization of energy and resistance to OA-induced 
            
92
stress. Taken together, K. mikimotoi appeared as a tolerant species in 
92
stress. Taken together, K. mikimotoi appeared as a tolerant species in 
            
93
response to OA. Thus, more extensive algal blooms that threaten marine 
93
response to OA. Thus, more extensive algal blooms that threaten marine 
            
94
organisms are likely in the future. These findings expand current 
94
organisms are likely in the future. These findings expand current 
            
95
knowledge on the gene expression of HAB-forming species in response to 
95
knowledge on the gene expression of HAB-forming species in response to 
            
96
future OA.",
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future OA.",
            
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    "approval_status": "approved",
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    "approval_status": "approved",
            
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Science): The information system PANGAEA is operated as an Open Access 
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Science): The information system PANGAEA is operated as an Open Access 
            
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library aimed at archiving, publishing and distributing georeferenced 
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library aimed at archiving, publishing and distributing georeferenced 
            
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data from earth system research. PANGAEA guarantees long-term 
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observational data, experimental data, and models/simulations. 
            
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Citability, comprehensive metadata descriptions, interoperability of 
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data and metadata, a high degree of structural and semantic 
            
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harmonization of the data inventory as well as the commitment of the 
            
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hosting institutions ensures FAIRness of archived data.",
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hosting institutions ensures FAIRness of archived data.",
            
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    "is_organization": true,
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    "name": "pangaea_biosphere",
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    "name": "pangaea_oceans",
            
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    "state": "active",
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  "publication_year": "2022",
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  "publication_year": "2022",
            
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  "related_identifiers": [
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  "related_identifiers": [
            
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    {
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    {
            
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      "authors": "Zhang J,Yang Q,Liu Q,Liu S,Zhu Yue,Yao Jiang,Wang 
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      "authors": "Zhang J,Yang Q,Liu Q,Liu S,Zhu Yue,Yao Jiang,Wang 
            
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Hong,Guan WanChun,Gattuso Jean-Pierre,Epitalon Jean-Marie,Lavigne 
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Hong,Guan WanChun,Gattuso Jean-Pierre,Epitalon Jean-Marie,Lavigne 
            
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H\u00e9lo\u00efse,Orr James",
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H\u00e9lo\u00efse,Orr James",
            
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      "email_authors": 
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      "email_authors": 
            
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tuso@imev-mer.fr,,hlavigne@naturalsciences.be,James.Orr@lsce.ipsl.fr",
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tuso@imev-mer.fr,,hlavigne@naturalsciences.be,James.Orr@lsce.ipsl.fr",
            
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      "identifier": "https://doi.org/10.1016/j.hal.2021.102167",
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      "identifier": "https://doi.org/10.1016/j.hal.2021.102167",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": 
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      "orcid_authors": 
            
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,,0000-0002-3616-351X,,,,,0000-0003-0427-9320,0000-0002-4533-4114,,,",
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      "relation_type": "References",
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      "relation_type": "References",
            
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      "source": "Harmful Algae",
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      "source": "Harmful Algae",
            
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      "title": "The responses of harmful dinoflagellate Karenia 
139
      "title": "The responses of harmful dinoflagellate Karenia 
            
140
mikimotoi to simulated ocean acidification at the transcriptional 
140
mikimotoi to simulated ocean acidification at the transcriptional 
            
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level",
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level",
            
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      "year": "2022"
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      "year": "2022"
            
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    },
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    },
            
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    {
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    {
            
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      "authors": "Zhang J,Yang Q,Liu Q,Liu S,Zhu Yue,Yao Jiang,Wang 
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      "authors": "Zhang J,Yang Q,Liu Q,Liu S,Zhu Yue,Yao Jiang,Wang 
            
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Hong,Guan WanChun,Gattuso Jean-Pierre,Epitalon Jean-Marie,Lavigne 
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Hong,Guan WanChun,Gattuso Jean-Pierre,Epitalon Jean-Marie,Lavigne 
            
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H\u00e9lo\u00efse,Orr James",
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H\u00e9lo\u00efse,Orr James",
            
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      "email_authors": 
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      "email_authors": 
            
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tuso@imev-mer.fr,,hlavigne@naturalsciences.be,James.Orr@lsce.ipsl.fr",
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tuso@imev-mer.fr,,hlavigne@naturalsciences.be,James.Orr@lsce.ipsl.fr",
            
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      "identifier": 
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      "identifier": 
            
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"https://cran.r-project.org/web/packages/seacarb/index.html",
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"https://cran.r-project.org/web/packages/seacarb/index.html",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": 
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      "orcid_authors": 
            
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,,0000-0002-3616-351X,,,,,0000-0003-0427-9320,0000-0002-4533-4114,,,",
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,,0000-0002-3616-351X,,,,,0000-0003-0427-9320,0000-0002-4533-4114,,,",
            
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      "relation_type": "References",
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      "relation_type": "References",
            
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      "source": "",
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      "source": "",
            
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      "title": "seacarb: seawater carbonate chemistry with R. R 
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      "title": "seacarb: seawater carbonate chemistry with R. R 
            
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package version 3.2.16",
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package version 3.2.16",
            
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      "year": "2021"
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      "year": "2021"
            
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Environmental Science)",
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Environmental Science)",
            
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  "source_metadata_created": "2022",
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  "source_metadata_created": "2022",
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "BiologicalClassification"
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      "subject_area_name": "BiologicalClassification"
            
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    },
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Biosphere"
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      "subject_area_name": "Biosphere"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Chemistry"
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      "subject_area_name": "Chemistry"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Oceans"
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      "subject_area_name": "Oceans"
            
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    }
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    }
            
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      "display_name": "Other metabolic rates",
            
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      "name": "Other metabolic rates",
            
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    {
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Phytoplankton",
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      "display_name": "Phytoplankton",
            
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      "id": "9c357867-c046-43fa-ad3e-39f612d5622b",
            
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      "name": "Phytoplankton",
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      "name": "Phytoplankton",
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Single species",
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      "display_name": "Single species",
            
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      "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d",
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      "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d",
            
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      "name": "Single species",
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      "name": "Single species",
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    }
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    }
            
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  ],
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  ],
            
276
  "title": "Seawater carbonate chemistry and the physiological 
290
  "title": "Seawater carbonate chemistry and the physiological 
            
277
responses of harmful dinoflagellate Karenia mikimotoi",
291
responses of harmful dinoflagellate Karenia mikimotoi",
            
278
  "type": "vdataset",
292
  "type": "vdataset",
            
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  "url": "https://doi.org/10.1594/PANGAEA.945242"
293
  "url": "https://doi.org/10.1594/PANGAEA.945242"
            
280
}
294
}