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f | 1 | { | f | 1 | { |
2 | "author": "Ding Su", | 2 | "author": "Ding Su", | ||
3 | "author_email": "", | 3 | "author_email": "", | ||
4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | 4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | ||
5 | "doi": "10.1594/PANGAEA.910617", | 5 | "doi": "10.1594/PANGAEA.910617", | ||
6 | "doi_date_published": "2020", | 6 | "doi_date_published": "2020", | ||
7 | "doi_publisher": "", | 7 | "doi_publisher": "", | ||
8 | "doi_status": "True", | 8 | "doi_status": "True", | ||
9 | "extra_authors": [ | 9 | "extra_authors": [ | ||
10 | { | 10 | { | ||
11 | "extra_author": "Lange Markus", | 11 | "extra_author": "Lange Markus", | ||
12 | "orcid": "0000-0002-2802-9177" | 12 | "orcid": "0000-0002-2802-9177" | ||
13 | }, | 13 | }, | ||
14 | { | 14 | { | ||
15 | "extra_author": "Lipp Julius S", | 15 | "extra_author": "Lipp Julius S", | ||
16 | "orcid": "0000-0002-4109-3317" | 16 | "orcid": "0000-0002-4109-3317" | ||
17 | }, | 17 | }, | ||
18 | { | 18 | { | ||
19 | "extra_author": "Schwab Val\u00e9rie F", | 19 | "extra_author": "Schwab Val\u00e9rie F", | ||
20 | "orcid": "" | 20 | "orcid": "" | ||
21 | }, | 21 | }, | ||
22 | { | 22 | { | ||
23 | "extra_author": "Chowdhury Somak", | 23 | "extra_author": "Chowdhury Somak", | ||
24 | "orcid": "" | 24 | "orcid": "" | ||
25 | }, | 25 | }, | ||
26 | { | 26 | { | ||
27 | "extra_author": "Pollierer Melanie M", | 27 | "extra_author": "Pollierer Melanie M", | ||
28 | "orcid": "" | 28 | "orcid": "" | ||
29 | }, | 29 | }, | ||
30 | { | 30 | { | ||
31 | "extra_author": "Krause Katrin", | 31 | "extra_author": "Krause Katrin", | ||
32 | "orcid": "" | 32 | "orcid": "" | ||
33 | }, | 33 | }, | ||
34 | { | 34 | { | ||
35 | "extra_author": "Li Dapeng", | 35 | "extra_author": "Li Dapeng", | ||
36 | "orcid": "" | 36 | "orcid": "" | ||
37 | }, | 37 | }, | ||
38 | { | 38 | { | ||
39 | "extra_author": "Kothe Erika", | 39 | "extra_author": "Kothe Erika", | ||
40 | "orcid": "" | 40 | "orcid": "" | ||
41 | }, | 41 | }, | ||
42 | { | 42 | { | ||
43 | "extra_author": "Scheu Stefan", | 43 | "extra_author": "Scheu Stefan", | ||
44 | "orcid": "0000-0003-4350-9520" | 44 | "orcid": "0000-0003-4350-9520" | ||
45 | }, | 45 | }, | ||
46 | { | 46 | { | ||
47 | "extra_author": "Welti Ruth", | 47 | "extra_author": "Welti Ruth", | ||
48 | "orcid": "0000-0003-4373-2538" | 48 | "orcid": "0000-0003-4373-2538" | ||
49 | }, | 49 | }, | ||
50 | { | 50 | { | ||
51 | "extra_author": "Hinrichs Kai-Uwe", | 51 | "extra_author": "Hinrichs Kai-Uwe", | ||
52 | "orcid": "0000-0002-0739-9291" | 52 | "orcid": "0000-0002-0739-9291" | ||
53 | }, | 53 | }, | ||
54 | { | 54 | { | ||
55 | "extra_author": "Gleixner Gerd", | 55 | "extra_author": "Gleixner Gerd", | ||
56 | "orcid": "0000-0002-4616-0953" | 56 | "orcid": "0000-0002-4616-0953" | ||
57 | } | 57 | } | ||
58 | ], | 58 | ], | ||
59 | "groups": [], | 59 | "groups": [], | ||
60 | "id": "e734ab2f-e0b0-4f64-96fd-6d181687a3d1", | 60 | "id": "e734ab2f-e0b0-4f64-96fd-6d181687a3d1", | ||
61 | "isopen": false, | 61 | "isopen": false, | ||
62 | "license_id": "CC-BY-4.0", | 62 | "license_id": "CC-BY-4.0", | ||
63 | "license_title": "CC-BY-4.0", | 63 | "license_title": "CC-BY-4.0", | ||
64 | "metadata_created": "2023-01-12T13:31:17.600450", | 64 | "metadata_created": "2023-01-12T13:31:17.600450", | ||
t | 65 | "metadata_modified": "2023-08-04T09:32:41.550247", | t | 65 | "metadata_modified": "2023-08-04T09:33:47.218396", |
66 | "name": "png-doi-10-1594-pangaea-910617", | 66 | "name": "png-doi-10-1594-pangaea-910617", | ||
67 | "notes": "Soil and root samples were taken at the Jena Experiment, a | 67 | "notes": "Soil and root samples were taken at the Jena Experiment, a | ||
68 | large grassland biodiversity experiment located in the Saale valley | 68 | large grassland biodiversity experiment located in the Saale valley | ||
69 | near Jena (east Thuringia, Germany, 50\u00b055'N, 11\u00b035'E, 130 m | 69 | near Jena (east Thuringia, Germany, 50\u00b055'N, 11\u00b035'E, 130 m | ||
70 | above sea level). In 2002, the experiment was established with a total | 70 | above sea level). In 2002, the experiment was established with a total | ||
71 | number of 81 grassland plots of 20 \u00d7 20 m (Roscher et al., 2004). | 71 | number of 81 grassland plots of 20 \u00d7 20 m (Roscher et al., 2004). | ||
72 | The soil type is Eutric Fluvisol and the soil texture changes from | 72 | The soil type is Eutric Fluvisol and the soil texture changes from | ||
73 | sandy loam to silty clay with increasing distance to the Saale river | 73 | sandy loam to silty clay with increasing distance to the Saale river | ||
74 | (FAO-Unesco, 1997; Fischer et al., 2014). In June 2016, three surface | 74 | (FAO-Unesco, 1997; Fischer et al., 2014). In June 2016, three surface | ||
75 | soil samples (0-10 cm) from each plot were collected, combined to | 75 | soil samples (0-10 cm) from each plot were collected, combined to | ||
76 | reduce the spatial heterogeneity, and homogenized. The soil samples | 76 | reduce the spatial heterogeneity, and homogenized. The soil samples | ||
77 | were sieved (2 mm mesh size). Fine roots (if present) were picked | 77 | were sieved (2 mm mesh size). Fine roots (if present) were picked | ||
78 | using steel tweezers and stored at \u221220 \u2103. The root samples | 78 | using steel tweezers and stored at \u221220 \u2103. The root samples | ||
79 | were taken separately from six plots with different combinations of | 79 | were taken separately from six plots with different combinations of | ||
80 | four functional groups (grass, legume, tall herb, small herb; Table | 80 | four functional groups (grass, legume, tall herb, small herb; Table | ||
81 | S1). The roots were washed, freeze-dried and frozen. All fungal | 81 | S1). The roots were washed, freeze-dried and frozen. All fungal | ||
82 | strains used originate from Jena Microbial Resource Collection (JRMC), | 82 | strains used originate from Jena Microbial Resource Collection (JRMC), | ||
83 | University of Jena and HKI, Germany. The saprotrophic fungi | 83 | University of Jena and HKI, Germany. The saprotrophic fungi | ||
84 | Schizophyllum commune FSU:3214xFSU:2896 and Mucor plumbeus | 84 | Schizophyllum commune FSU:3214xFSU:2896 and Mucor plumbeus | ||
85 | JMRC:SF:013709 were cultivated in Petri dishes on solid complex yeast | 85 | JMRC:SF:013709 were cultivated in Petri dishes on solid complex yeast | ||
86 | medium (CYM; Schwalb and Miles, 1967) and the mycorrhizal fungi | 86 | medium (CYM; Schwalb and Miles, 1967) and the mycorrhizal fungi | ||
87 | Tricholoma vaccinum JMRC:FSU:4731 and Pisolithus tinctorius FSU:10019 | 87 | Tricholoma vaccinum JMRC:FSU:4731 and Pisolithus tinctorius FSU:10019 | ||
88 | on modified Melin Norkrans b (MMNb) medium (Kottke et al., 1987) at | 88 | on modified Melin Norkrans b (MMNb) medium (Kottke et al., 1987) at | ||
89 | room temperature for 2 and 5 days for the fast growing M. plumbeus and | 89 | room temperature for 2 and 5 days for the fast growing M. plumbeus and | ||
90 | S. commune and 2 and 3 weeks for the slow growing P. tinctorius and T. | 90 | S. commune and 2 and 3 weeks for the slow growing P. tinctorius and T. | ||
91 | vaccinum (Table S1).\nFurther six bacterial strains were chosen for | 91 | vaccinum (Table S1).\nFurther six bacterial strains were chosen for | ||
92 | this study: Streptomyces acidiscabies E13 (JMRC:ST:033552 from JRMC), | 92 | this study: Streptomyces acidiscabies E13 (JMRC:ST:033552 from JRMC), | ||
93 | Streptomyces mirabilis P16B-1 (Schmidt et al., 2009), Bacillus | 93 | Streptomyces mirabilis P16B-1 (Schmidt et al., 2009), Bacillus | ||
94 | subtilis DSM-10, Agrobacterium tumefaciens DSM-30150, Pseudomonas | 94 | subtilis DSM-10, Agrobacterium tumefaciens DSM-30150, Pseudomonas | ||
95 | fluorescens DSM-50090 (DSMZ, Braunschweig, Germany), and Acetobacter | 95 | fluorescens DSM-50090 (DSMZ, Braunschweig, Germany), and Acetobacter | ||
96 | xylinum NQ5 (ATCC 53582; ATCC, USA European Office at Wesel, Germany). | 96 | xylinum NQ5 (ATCC 53582; ATCC, USA European Office at Wesel, Germany). | ||
97 | The strains were cultivated for 2 to 5 days in Petri dishes on minimal | 97 | The strains were cultivated for 2 to 5 days in Petri dishes on minimal | ||
98 | medium (MM; Schmidt et al. 2009) at 28 \u00b0C.\nThe collembolans | 98 | medium (MM; Schmidt et al. 2009) at 28 \u00b0C.\nThe collembolans | ||
99 | species Heteromurus nitidus (Templeton, 1835) and Folsomia candida | 99 | species Heteromurus nitidus (Templeton, 1835) and Folsomia candida | ||
100 | Willem, 1902 were taken from laboratory cultures fed with baker's | 100 | Willem, 1902 were taken from laboratory cultures fed with baker's | ||
101 | yeast (Saccharomyces cerevisiae; Table S1). Laboratory cultures were | 101 | yeast (Saccharomyces cerevisiae; Table S1). Laboratory cultures were | ||
102 | maintained in glass jars filled with moist potting soil at 15 \u00b0C | 102 | maintained in glass jars filled with moist potting soil at 15 \u00b0C | ||
103 | in darkness and kept moist with distilled water. Before analysis, | 103 | in darkness and kept moist with distilled water. Before analysis, | ||
104 | collembolans were starved for three days to empty their guts; | 104 | collembolans were starved for three days to empty their guts; | ||
105 | subsequently they were frozen and stored in methanol.\nPolysphondylium | 105 | subsequently they were frozen and stored in methanol.\nPolysphondylium | ||
106 | pallidum strain was from the Stallforth Lab at Leibniz Institute for | 106 | pallidum strain was from the Stallforth Lab at Leibniz Institute for | ||
107 | Natural Product Research and Infection Biology in Jena (Germany). | 107 | Natural Product Research and Infection Biology in Jena (Germany). | ||
108 | Amoebae were cultured (xenically) in the presence of the bacterium | 108 | Amoebae were cultured (xenically) in the presence of the bacterium | ||
109 | Klebsiella aerogenes as food. Briefly, amoebal spore suspension (from | 109 | Klebsiella aerogenes as food. Briefly, amoebal spore suspension (from | ||
110 | previously collected sori) was added to the surface of SM/5 agar plate | 110 | previously collected sori) was added to the surface of SM/5 agar plate | ||
111 | seeded with 1 X 108 CFU/ml food bacterium K. aerogenes. Plates were | 111 | seeded with 1 X 108 CFU/ml food bacterium K. aerogenes. Plates were | ||
112 | incubated at 22\u00b0C for 7 to 10 days for mature fruiting bodies to | 112 | incubated at 22\u00b0C for 7 to 10 days for mature fruiting bodies to | ||
113 | appear. The entire cell mass of amoebal fruiting bodies was carefully | 113 | appear. The entire cell mass of amoebal fruiting bodies was carefully | ||
114 | collected using a sterile inoculation loop and suspended in KK2 | 114 | collected using a sterile inoculation loop and suspended in KK2 | ||
115 | buffer. This cell mass was washed clean of any attached bacteria using | 115 | buffer. This cell mass was washed clean of any attached bacteria using | ||
116 | the same buffer. Resulting amoebal cells were then subjected to | 116 | the same buffer. Resulting amoebal cells were then subjected to | ||
117 | further analysis.\nBefore analyses, roots, fungi, collembolans and | 117 | further analysis.\nBefore analyses, roots, fungi, collembolans and | ||
118 | amoebae were frozen in liquid nitrogen. They were ground into fine | 118 | amoebae were frozen in liquid nitrogen. They were ground into fine | ||
119 | powder and extracted using the same protocol as for the soil samples. | 119 | powder and extracted using the same protocol as for the soil samples. | ||
120 | Cultured bacteria were collected from Petri dish plates, weighed and | 120 | Cultured bacteria were collected from Petri dish plates, weighed and | ||
121 | extracted using the same protocol.", | 121 | extracted using the same protocol.", | ||
122 | "num_resources": 0, | 122 | "num_resources": 0, | ||
123 | "num_tags": 0, | 123 | "num_tags": 0, | ||
124 | "orcid": "0000-0001-6213-3982", | 124 | "orcid": "0000-0001-6213-3982", | ||
125 | "organization": { | 125 | "organization": { | ||
126 | "approval_status": "approved", | 126 | "approval_status": "approved", | ||
127 | "created": "2023-08-04T09:32:38.098376", | 127 | "created": "2023-08-04T09:32:38.098376", | ||
128 | "description": "PANGAEA (Data Publisher for Earth & Environmental | 128 | "description": "PANGAEA (Data Publisher for Earth & Environmental | ||
129 | Science): The information system PANGAEA is operated as an Open Access | 129 | Science): The information system PANGAEA is operated as an Open Access | ||
130 | library aimed at archiving, publishing and distributing georeferenced | 130 | library aimed at archiving, publishing and distributing georeferenced | ||
131 | data from earth system research. PANGAEA guarantees long-term | 131 | data from earth system research. PANGAEA guarantees long-term | ||
132 | availability (greater than 10 years) of its content. PANGAEA is open | 132 | availability (greater than 10 years) of its content. PANGAEA is open | ||
133 | to any project, institution, or individual scientist to use or to | 133 | to any project, institution, or individual scientist to use or to | ||
134 | archive and publish data. PANGAEA focuses on georeferenced | 134 | archive and publish data. PANGAEA focuses on georeferenced | ||
135 | observational data, experimental data, and models/simulations. | 135 | observational data, experimental data, and models/simulations. | ||
136 | Citability, comprehensive metadata descriptions, interoperability of | 136 | Citability, comprehensive metadata descriptions, interoperability of | ||
137 | data and metadata, a high degree of structural and semantic | 137 | data and metadata, a high degree of structural and semantic | ||
138 | harmonization of the data inventory as well as the commitment of the | 138 | harmonization of the data inventory as well as the commitment of the | ||
139 | hosting institutions ensures FAIRness of archived data.", | 139 | hosting institutions ensures FAIRness of archived data.", | ||
140 | "id": "93da141a-dc26-4ce9-bff3-b2b283505dcc", | 140 | "id": "93da141a-dc26-4ce9-bff3-b2b283505dcc", | ||
141 | "image_url": "pangea-logo.png", | 141 | "image_url": "pangea-logo.png", | ||
142 | "is_organization": true, | 142 | "is_organization": true, | ||
143 | "name": "pangaea", | 143 | "name": "pangaea", | ||
144 | "state": "active", | 144 | "state": "active", | ||
145 | "title": "PANGAEA (Agriculture)", | 145 | "title": "PANGAEA (Agriculture)", | ||
146 | "type": "organization" | 146 | "type": "organization" | ||
147 | }, | 147 | }, | ||
148 | "owner_org": "93da141a-dc26-4ce9-bff3-b2b283505dcc", | 148 | "owner_org": "93da141a-dc26-4ce9-bff3-b2b283505dcc", | ||
149 | "private": false, | 149 | "private": false, | ||
150 | "publication_year": "2020", | 150 | "publication_year": "2020", | ||
151 | "related_identifiers": [ | 151 | "related_identifiers": [ | ||
152 | { | 152 | { | ||
153 | "authors": "Ding Su,Lange Markus,Lipp Julius S,Schwab | 153 | "authors": "Ding Su,Lange Markus,Lipp Julius S,Schwab | ||
154 | Val\u00e9rie F,Chowdhury Somak,Pollierer Melanie M,Krause Katrin,Li | 154 | Val\u00e9rie F,Chowdhury Somak,Pollierer Melanie M,Krause Katrin,Li | ||
155 | Dapeng,Kothe Erika,Scheu Stefan,Welti Ruth,Hinrichs Kai-Uwe,Gleixner | 155 | Dapeng,Kothe Erika,Scheu Stefan,Welti Ruth,Hinrichs Kai-Uwe,Gleixner | ||
156 | Gerd", | 156 | Gerd", | ||
157 | "email_authors": | 157 | "email_authors": | ||
158 | ,,jlipp@uni-bremen.de,,,,,,,sscheu@gwdg.de,,khinrichs@uni-bremen.de,", | 158 | ,,jlipp@uni-bremen.de,,,,,,,sscheu@gwdg.de,,khinrichs@uni-bremen.de,", | ||
159 | "identifier": "https://doi.org/10.1016/j.soilbio.2020.108045", | 159 | "identifier": "https://doi.org/10.1016/j.soilbio.2020.108045", | ||
160 | "identifier_type": "DOI", | 160 | "identifier_type": "DOI", | ||
161 | "orcid_authors": | 161 | "orcid_authors": | ||
162 | 350-9520,0000-0003-4373-2538,0000-0002-0739-9291,0000-0002-4616-0953", | 162 | 350-9520,0000-0003-4373-2538,0000-0002-0739-9291,0000-0002-4616-0953", | ||
163 | "relation_type": "References", | 163 | "relation_type": "References", | ||
164 | "source": "Soil Biology and Biochemistry", | 164 | "source": "Soil Biology and Biochemistry", | ||
165 | "title": "Characteristics and origin of intact polar lipids in | 165 | "title": "Characteristics and origin of intact polar lipids in | ||
166 | soil organic matter", | 166 | soil organic matter", | ||
167 | "year": "2020" | 167 | "year": "2020" | ||
168 | } | 168 | } | ||
169 | ], | 169 | ], | ||
170 | "relationships_as_object": [], | 170 | "relationships_as_object": [], | ||
171 | "relationships_as_subject": [], | 171 | "relationships_as_subject": [], | ||
172 | "repository_name": "PANGAEA (Data Publisher for Earth & | 172 | "repository_name": "PANGAEA (Data Publisher for Earth & | ||
173 | Environmental Science)", | 173 | Environmental Science)", | ||
174 | "resource_type": "application/zip - filename: Ding-etal_2020", | 174 | "resource_type": "application/zip - filename: Ding-etal_2020", | ||
175 | "resources": [], | 175 | "resources": [], | ||
176 | "services_used_list": "", | 176 | "services_used_list": "", | ||
177 | "source_metadata_created": "2020", | 177 | "source_metadata_created": "2020", | ||
178 | "source_metadata_modified": "", | 178 | "source_metadata_modified": "", | ||
179 | "state": "active", | 179 | "state": "active", | ||
180 | "subject_areas": [ | 180 | "subject_areas": [ | ||
181 | { | 181 | { | ||
182 | "subject_area_additional": "", | 182 | "subject_area_additional": "", | ||
183 | "subject_area_name": "Agriculture" | 183 | "subject_area_name": "Agriculture" | ||
184 | }, | 184 | }, | ||
185 | { | 185 | { | ||
186 | "subject_area_additional": "", | 186 | "subject_area_additional": "", | ||
187 | "subject_area_name": "Lithosphere" | 187 | "subject_area_name": "Lithosphere" | ||
188 | } | 188 | } | ||
189 | ], | 189 | ], | ||
190 | "tags": [], | 190 | "tags": [], | ||
191 | "title": "Characterization of intact polar lipids in soils for | 191 | "title": "Characterization of intact polar lipids in soils for | ||
192 | assessing their origin", | 192 | assessing their origin", | ||
193 | "type": "vdataset", | 193 | "type": "vdataset", | ||
194 | "url": "https://doi.org/10.1594/PANGAEA.910617" | 194 | "url": "https://doi.org/10.1594/PANGAEA.910617" | ||
195 | } | 195 | } |