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{
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{
            
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  "author": "Dineshram, R",
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  "author": "Dineshram, R",
            
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  "author_email": "",
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  "author_email": "",
            
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  "citation": [],
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  "citation": [],
            
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            
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  "doi": "10.1594/PANGAEA.831445",
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  "doi": "10.1594/PANGAEA.831445",
            
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  "doi_date_published": "2013",
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  "doi_date_published": "2013",
            
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  "doi_publisher": "",
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  "doi_publisher": "",
            
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  "doi_status": "True",
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  "doi_status": "True",
            
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  "extra_authors": [
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  "extra_authors": [
            
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    {
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    {
            
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      "extra_author": "Thiyagarajan, Vengatesen",
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      "extra_author": "Thiyagarajan, Vengatesen",
            
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      "familyName": "Thiyagarajan",
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      "familyName": "Thiyagarajan",
            
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      "givenName": "Vengatesen",
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      "givenName": "Vengatesen",
            
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      "orcid": "0000-0002-2062-4799"
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      "orcid": "0000-0002-2062-4799"
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Lane, Ackley Charles",
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      "extra_author": "Lane, Ackley Charles",
            
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      "familyName": "Lane",
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      "familyName": "Lane",
            
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      "givenName": "Ackley Charles",
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      "givenName": "Ackley Charles",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Yu, Ziniu",
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      "extra_author": "Yu, Ziniu",
            
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      "familyName": "Yu",
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      "familyName": "Yu",
            
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      "givenName": "Ziniu",
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      "givenName": "Ziniu",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Shu, Xiao",
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      "extra_author": "Shu, Xiao",
            
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      "familyName": "Shu",
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      "familyName": "Shu",
            
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      "givenName": "Xiao",
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      "givenName": "Xiao",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Leung, Priscilla TY",
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      "extra_author": "Leung, Priscilla TY",
            
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      "familyName": "Leung",
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      "familyName": "Leung",
            
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      "givenName": "Priscilla TY",
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      "givenName": "Priscilla TY",
            
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      "orcid": ""
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      "orcid": ""
            
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    }
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    }
            
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  ],
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  ],
            
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  "familyName": "Dineshram",
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  "familyName": "Dineshram",
            
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  "givenName": "R",
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  "givenName": "R",
            
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  "id": "3ec0e989-bb1c-4f87-99e7-97f418945af4",
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  "id": "3ec0e989-bb1c-4f87-99e7-97f418945af4",
            
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  "license_id": "CC-BY-3.0",
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  "license_id": "CC-BY-3.0",
            
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  "license_title": "CC-BY-3.0",
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  "license_title": "CC-BY-3.0",
            
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  "metadata_created": "2024-11-29T11:34:56.771223",
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  "metadata_created": "2024-11-29T11:34:56.771223",
            
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  "metadata_modified": "2024-11-29T11:34:56.771228",
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  "metadata_modified": "2024-11-30T11:50:46.154335",
            
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  "name": "png-doi-10-1594-pangaea-831445",
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  "name": "png-doi-10-1594-pangaea-831445",
            
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  "notes": "Ocean acidification (OA) is beginning to have noticeable 
52
  "notes": "Ocean acidification (OA) is beginning to have noticeable 
            
53
negative impact on calcification rate, shell structure and 
53
negative impact on calcification rate, shell structure and 
            
54
physiological energy budgeting of several marine organisms; these 
54
physiological energy budgeting of several marine organisms; these 
            
55
alter the growth of many economically important shellfish including 
55
alter the growth of many economically important shellfish including 
            
56
oysters. Early life stages of oysters may be particularly vulnerable 
56
oysters. Early life stages of oysters may be particularly vulnerable 
            
57
to OA-driven low pH conditions because their shell is made up of the 
57
to OA-driven low pH conditions because their shell is made up of the 
            
58
highly soluble form of calcium carbonate (CaCO3) mineral, aragonite. 
58
highly soluble form of calcium carbonate (CaCO3) mineral, aragonite. 
            
59
Our long-term CO2 perturbation experiment showed that larval shell 
59
Our long-term CO2 perturbation experiment showed that larval shell 
            
60
growth rate of the oyster species Crassostrea hongkongensis was 
60
growth rate of the oyster species Crassostrea hongkongensis was 
            
61
significantly reduced at pH < 7.9 compared to the control (8.2). To 
61
significantly reduced at pH < 7.9 compared to the control (8.2). To 
            
62
gain new insights into the underlying mechanisms of low-pH-induced 
62
gain new insights into the underlying mechanisms of low-pH-induced 
            
63
delays in larval growth, we have examined the effect of pH on the 
63
delays in larval growth, we have examined the effect of pH on the 
            
64
protein expression pattern, including protein phosphorylation status 
64
protein expression pattern, including protein phosphorylation status 
            
65
at the pediveliger larval stage. Using two-dimensional electrophoresis 
65
at the pediveliger larval stage. Using two-dimensional electrophoresis 
            
66
and mass spectrometry, we demonstrated that the larval proteome was 
66
and mass spectrometry, we demonstrated that the larval proteome was 
            
67
significantly altered by the two low pH treatments (7.9 and 7.6) 
67
significantly altered by the two low pH treatments (7.9 and 7.6) 
            
68
compared to the control pH (8.2). Generally, the number of expressed 
68
compared to the control pH (8.2). Generally, the number of expressed 
            
69
proteins and their phosphorylation level decreased with low pH. 
69
proteins and their phosphorylation level decreased with low pH. 
            
70
Proteins involved in larval energy metabolism and calcification 
70
Proteins involved in larval energy metabolism and calcification 
            
71
appeared to be down-regulated in response to low pH, whereas cell 
71
appeared to be down-regulated in response to low pH, whereas cell 
            
72
motility and production of cytoskeletal proteins were increased. This 
72
motility and production of cytoskeletal proteins were increased. This 
            
73
study on larval growth coupled with proteome change is the first step 
73
study on larval growth coupled with proteome change is the first step 
            
74
toward the search for novel Protein Expression Signatures indicative 
74
toward the search for novel Protein Expression Signatures indicative 
            
75
of low pH, which may help in understanding the mechanisms involved in 
75
of low pH, which may help in understanding the mechanisms involved in 
            
76
low pH tolerance.",
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low pH tolerance.",
            
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    "approval_status": "approved",
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    "approval_status": "approved",
            
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    "created": "2024-11-29T11:32:00.143130",
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    "created": "2024-11-30T11:33:58.986659",
            
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    "description": "PANGAEA (Data Publisher for Earth & Environmental 
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    "description": "PANGAEA (Data Publisher for Earth & Environmental 
            
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Science): The information system PANGAEA is operated as an Open Access 
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Science): The information system PANGAEA is operated as an Open Access 
            
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library aimed at archiving, publishing and distributing georeferenced 
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library aimed at archiving, publishing and distributing georeferenced 
            
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data from earth system research. PANGAEA guarantees long-term 
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data from earth system research. PANGAEA guarantees long-term 
            
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availability (greater than 10 years) of its content. PANGAEA is open 
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availability (greater than 10 years) of its content. PANGAEA is open 
            
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to any project, institution, or individual scientist to use or to 
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to any project, institution, or individual scientist to use or to 
            
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archive and publish data. PANGAEA focuses on georeferenced 
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archive and publish data. PANGAEA focuses on georeferenced 
            
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observational data, experimental data, and models/simulations. 
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observational data, experimental data, and models/simulations. 
            
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Citability, comprehensive metadata descriptions, interoperability of 
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Citability, comprehensive metadata descriptions, interoperability of 
            
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data and metadata, a high degree of structural and semantic 
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data and metadata, a high degree of structural and semantic 
            
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harmonization of the data inventory as well as the commitment of the 
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harmonization of the data inventory as well as the commitment of the 
            
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hosting institutions ensures FAIRness of archived data.",
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hosting institutions ensures FAIRness of archived data.",
            
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    "is_organization": true,
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    "name": "pangaea_biosphere",
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    "name": "pangaea_oceans",
            
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    "state": "active",
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    "state": "active",
            
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    "title": "PANGAEA (Biosphere)",
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    "title": "PANGAEA (Oceans)",
            
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    "type": "organization"
            
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  "private": false,
            
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  "publication_year": "2013",
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  "publication_year": "2013",
            
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  "related_identifiers": [
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  "related_identifiers": [
            
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    {
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    {
            
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      "authors": "Dineshram R,Thiyagarajan Vengatesen,Lane Ackley 
108
      "authors": "Dineshram R,Thiyagarajan Vengatesen,Lane Ackley 
            
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Charles,Yu Ziniu,Shu Xiao,Leung Priscilla TY",
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Charles,Yu Ziniu,Shu Xiao,Leung Priscilla TY",
            
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      "email_authors": ",rajan@hku.hk,,,,",
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      "email_authors": ",rajan@hku.hk,,,,",
            
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      "identifier": "https://doi.org/10.1007/s00227-013-2176-x",
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      "identifier": "https://doi.org/10.1007/s00227-013-2176-x",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": ",0000-0002-2062-4799,,,,",
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      "orcid_authors": ",0000-0002-2062-4799,,,,",
            
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      "relation_type": "IsSupplementTo",
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      "relation_type": "IsSupplementTo",
            
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      "source": "Marine Biology",
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      "source": "Marine Biology",
            
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      "title": "Elevated CO2 alters larval proteome and its 
116
      "title": "Elevated CO2 alters larval proteome and its 
            
117
phosphorylation status in the commercial oyster, Crassostrea 
117
phosphorylation status in the commercial oyster, Crassostrea 
            
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hongkongensis",
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hongkongensis",
            
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      "year": "2013"
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      "year": "2013"
            
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    },
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    },
            
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    {
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    {
            
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      "authors": "Lavigne H\u00e9lo\u00efse,Gattuso Jean-Pierre",
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      "authors": "Lavigne H\u00e9lo\u00efse,Gattuso Jean-Pierre",
            
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      "email_authors": 
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      "email_authors": 
            
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"hlavigne@naturalsciences.be,jean-pierre.gattuso@imev-mer.fr",
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"hlavigne@naturalsciences.be,jean-pierre.gattuso@imev-mer.fr",
            
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      "identifier": "https://cran.r-project.org/package=seacarb",
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      "identifier": "https://cran.r-project.org/package=seacarb",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": ",0000-0002-4533-4114",
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      "orcid_authors": ",0000-0002-4533-4114",
            
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      "relation_type": "References",
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      "relation_type": "References",
            
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      "source": "",
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      "source": "",
            
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      "title": "seacarb: seawater carbonate chemistry with R. R 
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      "title": "seacarb: seawater carbonate chemistry with R. R 
            
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package version 2.4",
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package version 2.4",
            
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      "year": "2011"
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      "year": "2011"
            
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    }
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    }
            
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  ],
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  ],
            
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  "repository_name": "PANGAEA (Data Publisher for Earth & 
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  "repository_name": "PANGAEA (Data Publisher for Earth & 
            
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Environmental Science)",
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Environmental Science)",
            
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  "resource_type": "text/tab-separated-values - filename: 
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  "resource_type": "text/tab-separated-values - filename: 
            
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Dineshram_2013",
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Dineshram_2013",
            
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  "resources": [],
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  "resources": [],
            
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  "source_metadata_created": "2013",
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  "source_metadata_created": "2013",
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "BiologicalClassification"
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      "subject_area_name": "BiologicalClassification"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Biosphere"
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      "subject_area_name": "Biosphere"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Chemistry"
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      "subject_area_name": "Chemistry"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Oceans"
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      "subject_area_name": "Oceans"
            
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    }
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    }
            
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  ],
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  ],
            
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  "tags": [
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  "tags": [
            
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    {
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    {
            
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      "display_name": "1000 L or  1 m2",
            
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      "id": "d920ecdb-c44e-43f2-bb4c-ffdc3a3c398c",
            
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      "name": "1000 L or  1 m2",
            
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      "display_name": "Animalia",
            
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      "name": "Animalia",
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      "name": "Animalia",
            
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      "state": "active",
            
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    },
            
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    {
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    {
            
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      "display_name": "Coast and continental shelf",
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      "display_name": "Coast and continental shelf",
            
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      "name": "Coast and continental shelf",
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      "name": "Coast and continental shelf",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Containers and aquaria 20-1000 L or  1 m2",
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      "display_name": "Containers and aquaria 20",
            
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      "id": "a9d9036d-3fe8-4fb1-bcb9-07b8a3a3fe11",
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      "id": "18d57eca-7aec-4d8a-9a57-92bf32a45d53",
            
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      "name": "Containers and aquaria 20-1000 L or  1 m2",
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      "name": "Containers and aquaria 20",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Crassostrea hongkongensis",
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      "display_name": "Crassostrea hongkongensis",
            
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      "id": "b45aac64-3755-4524-8147-c765c85edf11",
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      "id": "b45aac64-3755-4524-8147-c765c85edf11",
            
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      "name": "Crassostrea hongkongensis",
195
      "name": "Crassostrea hongkongensis",
            
189
      "state": "active",
196
      "state": "active",
            
190
      "vocabulary_id": null
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      "vocabulary_id": null
            
191
    },
198
    },
            
192
    {
199
    {
            
193
      "display_name": "Gene expression incl. proteomics",
200
      "display_name": "Gene expression incl. proteomics",
            
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      "id": "a266e76f-1f2a-427a-97e6-8e248d591f17",
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      "id": "a266e76f-1f2a-427a-97e6-8e248d591f17",
            
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      "name": "Gene expression incl. proteomics",
202
      "name": "Gene expression incl. proteomics",
            
196
      "state": "active",
203
      "state": "active",
            
197
      "vocabulary_id": null
204
      "vocabulary_id": null
            
198
    },
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    },
            
199
    {
206
    {
            
n
200
      "display_name": "Growth-Morphology",
n
207
      "display_name": "Growth",
            
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      "id": "b00c4eac-980d-42b2-bae9-0aa1b212cf54",
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      "id": "898cbb0c-ff61-4ca3-9e35-0ef6fbb8eb98",
            
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      "name": "Growth-Morphology",
209
      "name": "Growth",
            
203
      "state": "active",
210
      "state": "active",
            
204
      "vocabulary_id": null
211
      "vocabulary_id": null
            
205
    },
212
    },
            
206
    {
213
    {
            
207
      "display_name": "Laboratory experiment",
214
      "display_name": "Laboratory experiment",
            
208
      "id": "c6c00754-c769-4932-a517-bff2c9512884",
215
      "id": "c6c00754-c769-4932-a517-bff2c9512884",
            
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      "name": "Laboratory experiment",
216
      "name": "Laboratory experiment",
            
210
      "state": "active",
217
      "state": "active",
            
211
      "vocabulary_id": null
218
      "vocabulary_id": null
            
212
    },
219
    },
            
213
    {
220
    {
            
214
      "display_name": "Mollusca",
221
      "display_name": "Mollusca",
            
215
      "id": "006d5f6d-11b3-4c34-a35a-879d7cd074c8",
222
      "id": "006d5f6d-11b3-4c34-a35a-879d7cd074c8",
            
216
      "name": "Mollusca",
223
      "name": "Mollusca",
            
t
t
224
      "state": "active",
            
225
      "vocabulary_id": null
            
226
    },
            
227
    {
            
228
      "display_name": "Morphology",
            
229
      "id": "2345107d-a1a2-43c1-8b38-d670ea499006",
            
230
      "name": "Morphology",
            
217
      "state": "active",
231
      "state": "active",
            
218
      "vocabulary_id": null
232
      "vocabulary_id": null
            
219
    },
233
    },
            
220
    {
234
    {
            
221
      "display_name": "North Pacific",
235
      "display_name": "North Pacific",
            
222
      "id": "efbdbaff-aa72-4a57-8e03-e9f84253d644",
236
      "id": "efbdbaff-aa72-4a57-8e03-e9f84253d644",
            
223
      "name": "North Pacific",
237
      "name": "North Pacific",
            
224
      "state": "active",
238
      "state": "active",
            
225
      "vocabulary_id": null
239
      "vocabulary_id": null
            
226
    },
240
    },
            
227
    {
241
    {
            
228
      "display_name": "Pelagos",
242
      "display_name": "Pelagos",
            
229
      "id": "012f5b69-4e75-4f54-8ac4-8bf192cafaa2",
243
      "id": "012f5b69-4e75-4f54-8ac4-8bf192cafaa2",
            
230
      "name": "Pelagos",
244
      "name": "Pelagos",
            
231
      "state": "active",
245
      "state": "active",
            
232
      "vocabulary_id": null
246
      "vocabulary_id": null
            
233
    },
247
    },
            
234
    {
248
    {
            
235
      "display_name": "Single species",
249
      "display_name": "Single species",
            
236
      "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d",
250
      "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d",
            
237
      "name": "Single species",
251
      "name": "Single species",
            
238
      "state": "active",
252
      "state": "active",
            
239
      "vocabulary_id": null
253
      "vocabulary_id": null
            
240
    },
254
    },
            
241
    {
255
    {
            
242
      "display_name": "Tropical",
256
      "display_name": "Tropical",
            
243
      "id": "db8bd80f-8578-455b-acc6-6adbeae406b8",
257
      "id": "db8bd80f-8578-455b-acc6-6adbeae406b8",
            
244
      "name": "Tropical",
258
      "name": "Tropical",
            
245
      "state": "active",
259
      "state": "active",
            
246
      "vocabulary_id": null
260
      "vocabulary_id": null
            
247
    },
261
    },
            
248
    {
262
    {
            
249
      "display_name": "Zooplankton",
263
      "display_name": "Zooplankton",
            
250
      "id": "9a829b96-807f-48c1-84c6-8fa50a64f5a5",
264
      "id": "9a829b96-807f-48c1-84c6-8fa50a64f5a5",
            
251
      "name": "Zooplankton",
265
      "name": "Zooplankton",
            
252
      "state": "active",
266
      "state": "active",
            
253
      "vocabulary_id": null
267
      "vocabulary_id": null
            
254
    }
268
    }
            
255
  ],
269
  ],
            
256
  "title": "Elevated CO2 alters larval proteome and its 
270
  "title": "Elevated CO2 alters larval proteome and its 
            
257
phosphorylation status in the commercial oyster, Crassostrea 
271
phosphorylation status in the commercial oyster, Crassostrea 
            
258
hongkongensis",
272
hongkongensis",
            
259
  "type": "vdataset",
273
  "type": "vdataset",
            
260
  "url": "https://doi.org/10.1594/PANGAEA.831445"
274
  "url": "https://doi.org/10.1594/PANGAEA.831445"
            
261
}
275
}