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{
            
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  "author": "Dang, Xin",
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  "author": "Dang, Xin",
            
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  "author_email": "",
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  "author_email": "",
            
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  "citation": [],
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  "citation": [],
            
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            
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  "doi": "10.1594/PANGAEA.958552",
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  "doi": "10.1594/PANGAEA.958552",
            
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  "doi_date_published": "2023",
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  "doi_date_published": "2023",
            
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  "doi_publisher": "",
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  "doi_publisher": "",
            
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  "doi_status": "True",
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  "doi_status": "True",
            
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  "extra_authors": [
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  "extra_authors": [
            
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    {
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    {
            
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      "extra_author": "Huang, Qi",
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      "extra_author": "Huang, Qi",
            
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      "familyName": "Huang",
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      "familyName": "Huang",
            
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      "givenName": "Qi",
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      "givenName": "Qi",
            
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      "orcid": "0000-0002-0223-5730"
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      "orcid": "0000-0002-0223-5730"
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "He, Yuan-Qiu",
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      "extra_author": "He, Yuan-Qiu",
            
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      "familyName": "He",
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      "familyName": "He",
            
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      "givenName": "Yuan-Qiu",
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      "givenName": "Yuan-Qiu",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Gait\u00e1n-Espitia, Juan Diego",
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      "extra_author": "Gait\u00e1n-Espitia, Juan Diego",
            
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      "familyName": "Gait\u00e1n-Espitia",
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      "familyName": "Gait\u00e1n-Espitia",
            
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      "givenName": "Juan Diego",
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      "givenName": "Juan Diego",
            
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      "orcid": "0000-0001-8781-5736"
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      "orcid": "0000-0001-8781-5736"
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Zhang, Tong",
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      "extra_author": "Zhang, Tong",
            
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      "familyName": "Zhang",
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      "familyName": "Zhang",
            
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      "givenName": "Tong",
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      "givenName": "Tong",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Thiyagarajan, Vengatesen",
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      "extra_author": "Thiyagarajan, Vengatesen",
            
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      "familyName": "Thiyagarajan",
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      "familyName": "Thiyagarajan",
            
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      "givenName": "Vengatesen",
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      "givenName": "Vengatesen",
            
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      "orcid": "0000-0002-2062-4799"
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      "orcid": "0000-0002-2062-4799"
            
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    }
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    }
            
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  ],
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  ],
            
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  "familyName": "Dang",
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  "familyName": "Dang",
            
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  "givenName": "Xin",
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  "givenName": "Xin",
            
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  "license_id": "CC-BY-4.0",
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  "license_id": "CC-BY-4.0",
            
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  "license_title": "CC-BY-4.0",
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  "license_title": "CC-BY-4.0",
            
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  "metadata_created": "2024-11-29T12:09:14.850004",
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  "metadata_created": "2024-11-29T12:09:14.850004",
            
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  "metadata_modified": "2024-11-29T12:09:14.850009",
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  "metadata_modified": "2024-11-30T10:49:44.630582",
            
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  "name": "png-doi-10-1594-pangaea-958552",
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  "name": "png-doi-10-1594-pangaea-958552",
            
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  "notes": "Ocean acidification (OA) has important effects on the 
52
  "notes": "Ocean acidification (OA) has important effects on the 
            
53
intrinsic phenotypic characteristics of many marine organisms. 
53
intrinsic phenotypic characteristics of many marine organisms. 
            
54
Concomitantly, OA can alter the extended phenotypes of these organisms 
54
Concomitantly, OA can alter the extended phenotypes of these organisms 
            
55
by perturbing the structure and function of their associated 
55
by perturbing the structure and function of their associated 
            
56
microbiomes. It is unclear, however, the extent to which interactions 
56
microbiomes. It is unclear, however, the extent to which interactions 
            
57
between these levels of phenotypic change can modulate the capacity 
57
between these levels of phenotypic change can modulate the capacity 
            
58
for resilience to OA. Here, we explored this theoretical framework 
58
for resilience to OA. Here, we explored this theoretical framework 
            
59
assessing the influence of OA on intrinsic (immunological responses 
59
assessing the influence of OA on intrinsic (immunological responses 
            
60
and energy reserve) and extrinsic (gut microbiome) phenotypic 
60
and energy reserve) and extrinsic (gut microbiome) phenotypic 
            
61
characteristics and the survival of important calcifiers, the edible 
61
characteristics and the survival of important calcifiers, the edible 
            
62
oysters Crassostrea angulata and C. hongkongensis. After one-month 
62
oysters Crassostrea angulata and C. hongkongensis. After one-month 
            
63
exposure to experimental OA (pH 7.4) and control (pH 8.0) conditions, 
63
exposure to experimental OA (pH 7.4) and control (pH 8.0) conditions, 
            
64
we found species-specific responses characterised by elevated stress 
64
we found species-specific responses characterised by elevated stress 
            
65
(hemocyte apoptosis) and decreased survival in the coastal species (C. 
65
(hemocyte apoptosis) and decreased survival in the coastal species (C. 
            
66
angulata) compared with the estuarine species (C. hongkongensis). 
66
angulata) compared with the estuarine species (C. hongkongensis). 
            
67
Phagocytosis of hemocytes was not affected by OA but in vitro 
67
Phagocytosis of hemocytes was not affected by OA but in vitro 
            
68
bacterial clearance capability decreased in both species. Gut 
68
bacterial clearance capability decreased in both species. Gut 
            
69
microbial diversity decreased in C. angulata but not in C. 
69
microbial diversity decreased in C. angulata but not in C. 
            
70
hongkongensis. Overall, C. hongkongensis was capable of maintaining 
70
hongkongensis. Overall, C. hongkongensis was capable of maintaining 
            
71
the homeostasis of the immune system and energy supply under OA. In 
71
the homeostasis of the immune system and energy supply under OA. In 
            
72
contrast, C. angulata's immune function was suppressed, and the energy 
72
contrast, C. angulata's immune function was suppressed, and the energy 
            
73
reserve was imbalanced, which might be attributed to the declined 
73
reserve was imbalanced, which might be attributed to the declined 
            
74
microbial diversity and the functional loss of essential bacteria in 
74
microbial diversity and the functional loss of essential bacteria in 
            
75
the guts. This study highlights a species-specific response to OA 
75
the guts. This study highlights a species-specific response to OA 
            
76
determined by genetic background and local adaptation, shedding light 
76
determined by genetic background and local adaptation, shedding light 
            
77
on the understanding of host-microbiota-environment interactions in 
77
on the understanding of host-microbiota-environment interactions in 
            
78
future coastal acidification.",
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future coastal acidification.",
            
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    "approval_status": "approved",
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    "approval_status": "approved",
            
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Science): The information system PANGAEA is operated as an Open Access 
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Science): The information system PANGAEA is operated as an Open Access 
            
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library aimed at archiving, publishing and distributing georeferenced 
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library aimed at archiving, publishing and distributing georeferenced 
            
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data from earth system research. PANGAEA guarantees long-term 
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data from earth system research. PANGAEA guarantees long-term 
            
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availability (greater than 10 years) of its content. PANGAEA is open 
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availability (greater than 10 years) of its content. PANGAEA is open 
            
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to any project, institution, or individual scientist to use or to 
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to any project, institution, or individual scientist to use or to 
            
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archive and publish data. PANGAEA focuses on georeferenced 
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archive and publish data. PANGAEA focuses on georeferenced 
            
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observational data, experimental data, and models/simulations. 
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observational data, experimental data, and models/simulations. 
            
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Citability, comprehensive metadata descriptions, interoperability of 
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Citability, comprehensive metadata descriptions, interoperability of 
            
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data and metadata, a high degree of structural and semantic 
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data and metadata, a high degree of structural and semantic 
            
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harmonization of the data inventory as well as the commitment of the 
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harmonization of the data inventory as well as the commitment of the 
            
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hosting institutions ensures FAIRness of archived data.",
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hosting institutions ensures FAIRness of archived data.",
            
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  "publication_year": "2023",
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  "publication_year": "2023",
            
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  "related_identifiers": [
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  "related_identifiers": [
            
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    {
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    {
            
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      "authors": "Dang Xin,Huang Qi,He Yuan-Qiu,Gait\u00e1n-Espitia 
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      "authors": "Dang Xin,Huang Qi,He Yuan-Qiu,Gait\u00e1n-Espitia 
            
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Juan Diego,Zhang Tong,Thiyagarajan Vengatesen,Gattuso 
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Juan Diego,Zhang Tong,Thiyagarajan Vengatesen,Gattuso 
            
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Jean-Pierre,Epitalon Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr 
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Jean-Pierre,Epitalon Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr 
            
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James,Gentili Bernard,Hagens Mathilde,Hofmann Andreas,Mueller 
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James,Gentili Bernard,Hagens Mathilde,Hofmann Andreas,Mueller 
            
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Jens-Daniel,Proye Aur\u00e9lien,Rae James,Soetaert Karline",
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Jens-Daniel,Proye Aur\u00e9lien,Rae James,Soetaert Karline",
            
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      "email_authors": 
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      "email_authors": 
            
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lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
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lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
            
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      "identifier": "https://doi.org/10.1016/j.aquatox.2023.106413",
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      "identifier": "https://doi.org/10.1016/j.aquatox.2023.106413",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "relation_type": "References",
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      "relation_type": "References",
            
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      "source": "Aquatic Toxicology",
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      "source": "Aquatic Toxicology",
            
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      "title": "Ocean acidification drives gut microbiome changes 
123
      "title": "Ocean acidification drives gut microbiome changes 
            
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linked to species-specific immune defence",
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linked to species-specific immune defence",
            
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      "year": "2023"
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      "year": "2023"
            
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    },
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    },
            
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    {
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      "authors": "Dang Xin,Huang Qi,He Yuan-Qiu,Gait\u00e1n-Espitia 
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      "authors": "Dang Xin,Huang Qi,He Yuan-Qiu,Gait\u00e1n-Espitia 
            
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Juan Diego,Zhang Tong,Thiyagarajan Vengatesen,Gattuso 
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Juan Diego,Zhang Tong,Thiyagarajan Vengatesen,Gattuso 
            
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Jean-Pierre,Epitalon Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr 
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Jean-Pierre,Epitalon Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr 
            
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James,Gentili Bernard,Hagens Mathilde,Hofmann Andreas,Mueller 
131
James,Gentili Bernard,Hagens Mathilde,Hofmann Andreas,Mueller 
            
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Jens-Daniel,Proye Aur\u00e9lien,Rae James,Soetaert Karline",
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Jens-Daniel,Proye Aur\u00e9lien,Rae James,Soetaert Karline",
            
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      "email_authors": 
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      "email_authors": 
            
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lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
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lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
            
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      "identifier": 
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      "identifier": 
            
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"https://cran.r-project.org/web/packages/seacarb/index.html",
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"https://cran.r-project.org/web/packages/seacarb/index.html",
            
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      "identifier_type": "DOI",
            
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      "orcid_authors": 
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4,,,,,0000-0003-3980-1043,,,,0000-0003-3904-2526,0000-0003-4603-7100",
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      "relation_type": "References",
            
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      "source": "",
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      "source": "",
            
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      "title": "seacarb: seawater carbonate chemistry with R. R 
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      "title": "seacarb: seawater carbonate chemistry with R. R 
            
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package version 3.3.1",
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package version 3.3.1",
            
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      "year": "2022"
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      "year": "2022"
            
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Environmental Science)",
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Environmental Science)",
            
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Dang-etal_2023_AT",
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Dang-etal_2023_AT",
            
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      "subject_area_name": "BiologicalClassification"
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      "subject_area_name": "BiologicalClassification"
            
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    },
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Biosphere"
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      "subject_area_name": "Biosphere"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Chemistry"
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      "subject_area_name": "Chemistry"
            
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    },
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Ecology"
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      "subject_area_name": "Ecology"
            
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    },
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Oceans"
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      "subject_area_name": "Oceans"
            
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    }
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    }
            
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  ],
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  ],
            
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  "tags": [
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  "tags": [
            
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    {
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      "display_name": "Animalia",
            
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      "id": "e645e194-a2f7-40f1-ae7c-c1496be6f6bf",
            
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      "name": "Animalia",
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      "name": "Animalia",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Benthic animals",
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      "display_name": "Benthic animals",
            
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      "id": "ba711ac9-d2d3-4cff-8023-8b85163344bb",
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      "id": "ba711ac9-d2d3-4cff-8023-8b85163344bb",
            
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      "name": "Benthic animals",
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      "name": "Benthic animals",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Containers and aquaria 20",
            
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      "name": "Containers and aquaria 20-1000 L or  1 m2",
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Crassostrea angulata",
            
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      "id": "5d261daa-1f05-4eb9-a5f0-221bc1fbd2ba",
            
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      "name": "Crassostrea angulata",
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      "name": "Crassostrea angulata",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Crassostrea hongkongensis",
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      "display_name": "Crassostrea hongkongensis",
            
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      "id": "b45aac64-3755-4524-8147-c765c85edf11",
            
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      "name": "Crassostrea hongkongensis",
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      "name": "Crassostrea hongkongensis",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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    {
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    {
            
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      "name": "Immunology-Self-protection",
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      "name": "Immunology",
            
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      "state": "active",
            
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    {
            
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      "name": "Laboratory experiment",
            
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      "state": "active",
            
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    },
            
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    {
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    {
            
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      "name": "Laboratory strains",
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      "state": "active",
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      "state": "active",
            
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    {
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    {
            
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      "id": "006d5f6d-11b3-4c34-a35a-879d7cd074c8",
            
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      "name": "Mollusca",
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      "name": "Mollusca",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Mortality-Survival",
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      "display_name": "Mortality",
            
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      "id": "35c7bb04-7b62-4836-b299-63cd1060eece",
            
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      "name": "Mortality-Survival",
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      "name": "Mortality",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Not applicable",
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      "display_name": "Not applicable",
            
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      "id": "ff7fc64a-fa65-45cc-8191-258baccab3c7",
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      "id": "ff7fc64a-fa65-45cc-8191-258baccab3c7",
            
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      "name": "Not applicable",
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      "name": "Not applicable",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
264
    {
            
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      "display_name": "Other studied parameter or process",
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      "display_name": "Other studied parameter or process",
            
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      "id": "4dbbc15c-38d9-458f-b39a-60a698197ff3",
            
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      "name": "Other studied parameter or process",
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      "name": "Other studied parameter or process",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
271
    {
            
n
n
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      "display_name": "Self",
            
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      "id": "34b1f942-1c92-4fee-99d1-291bb80232a6",
            
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      "name": "Self",
            
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      "state": "active",
            
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    },
            
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    {
            
265
      "display_name": "Single species",
279
      "display_name": "Single species",
            
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      "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d",
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      "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d",
            
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      "name": "Single species",
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      "name": "Single species",
            
t
t
282
      "state": "active",
            
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      "vocabulary_id": null
            
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    },
            
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    {
            
286
      "display_name": "Survival",
            
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      "id": "85f42287-dcce-4d6f-b018-56f70887a7bc",
            
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      "name": "Survival",
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
            
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    {
            
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      "display_name": "protection",
            
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      "id": "64486a5e-aa52-4a3a-9426-fbcf2e3c2721",
            
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      "name": "protection",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    }
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    }
            
271
  ],
299
  ],
            
272
  "title": "Seawater carbonate chemistry and the intrinsic and 
300
  "title": "Seawater carbonate chemistry and the intrinsic and 
            
273
extrinsic phenotypic characteristics and the survival of important 
301
extrinsic phenotypic characteristics and the survival of important 
            
274
calcifiers, the edib oysters Crassostrea angulata and C. 
302
calcifiers, the edib oysters Crassostrea angulata and C. 
            
275
hongkongensis",
303
hongkongensis",
            
276
  "type": "vdataset",
304
  "type": "vdataset",
            
277
  "url": "https://doi.org/10.1594/PANGAEA.958552"
305
  "url": "https://doi.org/10.1594/PANGAEA.958552"
            
278
}
306
}