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f | 1 | { | f | 1 | { |
2 | "author": "Wittenburg, D\u00f6rte", | 2 | "author": "Wittenburg, D\u00f6rte", | ||
3 | "author_email": "", | 3 | "author_email": "", | ||
4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | 4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | ||
5 | "doi": "10.22000/280", | 5 | "doi": "10.22000/280", | ||
6 | "doi_date_published": "2020", | 6 | "doi_date_published": "2020", | ||
7 | "doi_publisher": "", | 7 | "doi_publisher": "", | ||
8 | "doi_status": "True", | 8 | "doi_status": "True", | ||
9 | "groups": [], | 9 | "groups": [], | ||
10 | "id": "3040bf2b-6d68-4420-9610-18ef03a3230b", | 10 | "id": "3040bf2b-6d68-4420-9610-18ef03a3230b", | ||
11 | "isopen": false, | 11 | "isopen": false, | ||
12 | "license_id": "CC BY 4.0 Attribution", | 12 | "license_id": "CC BY 4.0 Attribution", | ||
13 | "license_title": "CC BY 4.0 Attribution", | 13 | "license_title": "CC BY 4.0 Attribution", | ||
14 | "metadata_created": "2023-01-12T13:30:24.771350", | 14 | "metadata_created": "2023-01-12T13:30:24.771350", | ||
n | 15 | "metadata_modified": "2023-01-12T13:30:24.771358", | n | 15 | "metadata_modified": "2023-08-04T08:49:14.657797", |
16 | "name": "rdr-doi-10-22000-280", | 16 | "name": "rdr-doi-10-22000-280", | ||
17 | "notes": "Abstract: In Hampel et al. (2018, Fron Genet), we proposed | 17 | "notes": "Abstract: In Hampel et al. (2018, Fron Genet), we proposed | ||
18 | an advanced method for the estimation of paternal recombination rate | 18 | an advanced method for the estimation of paternal recombination rate | ||
19 | and maternal linkage disequilibrium between pairs of SNPs if genotypes | 19 | and maternal linkage disequilibrium between pairs of SNPs if genotypes | ||
20 | of paternal half sibs were available. To show practical usability of | 20 | of paternal half sibs were available. To show practical usability of | ||
21 | the approach, empirical bovine data comprising several half-sib | 21 | the approach, empirical bovine data comprising several half-sib | ||
22 | families have been investigated. However, the outcome of our method | 22 | families have been investigated. However, the outcome of our method | ||
23 | strongly depended on the order of SNPs. For instance, candidates of | 23 | strongly depended on the order of SNPs. For instance, candidates of | ||
24 | putatively misplaced SNPs were identified if recombination rate | 24 | putatively misplaced SNPs were identified if recombination rate | ||
25 | between close SNPs was unusually high. Since the bovine genome | 25 | between close SNPs was unusually high. Since the bovine genome | ||
26 | assembly has been updated to its current version ARS-UCD1.2, it was | 26 | assembly has been updated to its current version ARS-UCD1.2, it was | ||
27 | necessary to re-analyse the data. The parameter estimates as well as | 27 | necessary to re-analyse the data. The parameter estimates as well as | ||
28 | the input data are now jointly available from this repository. More | 28 | the input data are now jointly available from this repository. More | ||
29 | details about the methodology can be found in Hampel et al. (2018, | 29 | details about the methodology can be found in Hampel et al. (2018, | ||
30 | Fron Genet), https://doi.org/10.3389/fgene.2018.00186.", | 30 | Fron Genet), https://doi.org/10.3389/fgene.2018.00186.", | ||
31 | "num_resources": 0, | 31 | "num_resources": 0, | ||
32 | "num_tags": 3, | 32 | "num_tags": 3, | ||
33 | "orcid": "0000-0002-3639-2574", | 33 | "orcid": "0000-0002-3639-2574", | ||
34 | "organization": { | 34 | "organization": { | ||
35 | "approval_status": "approved", | 35 | "approval_status": "approved", | ||
36 | "created": "2023-01-12T13:30:23.238233", | 36 | "created": "2023-01-12T13:30:23.238233", | ||
37 | "description": "RADAR (Research Data Repository) is a | 37 | "description": "RADAR (Research Data Repository) is a | ||
38 | cross-disciplinary repository for archiving and publishing research | 38 | cross-disciplinary repository for archiving and publishing research | ||
39 | data from completed scientific studies and projects. The focus is on | 39 | data from completed scientific studies and projects. The focus is on | ||
40 | research data from subjects that do not yet have their own | 40 | research data from subjects that do not yet have their own | ||
41 | discipline-specific infrastructures for research data management. ", | 41 | discipline-specific infrastructures for research data management. ", | ||
42 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 42 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
43 | "image_url": "radar-logo.svg", | 43 | "image_url": "radar-logo.svg", | ||
44 | "is_organization": true, | 44 | "is_organization": true, | ||
45 | "name": "radar", | 45 | "name": "radar", | ||
46 | "state": "active", | 46 | "state": "active", | ||
47 | "title": "RADAR", | 47 | "title": "RADAR", | ||
48 | "type": "organization" | 48 | "type": "organization" | ||
49 | }, | 49 | }, | ||
50 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 50 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
51 | "private": false, | 51 | "private": false, | ||
52 | "production_year": "2019", | 52 | "production_year": "2019", | ||
53 | "publication_year": "2020", | 53 | "publication_year": "2020", | ||
54 | "publishers": [ | 54 | "publishers": [ | ||
55 | { | 55 | { | ||
56 | "publisher": " Leibniz Institute for Farm Animal Biology (FBN), | 56 | "publisher": " Leibniz Institute for Farm Animal Biology (FBN), | ||
57 | Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany" | 57 | Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany" | ||
58 | } | 58 | } | ||
59 | ], | 59 | ], | ||
n | n | 60 | "related_identifiers": [ | ||
61 | { | ||||
62 | "identifier": "10.3389/fgene.2018.00186", | ||||
63 | "identifier_type": "DOI", | ||||
64 | "relation_type": "IsSupplementTo" | ||||
65 | } | ||||
66 | ], | ||||
60 | "relationships_as_object": [], | 67 | "relationships_as_object": [], | ||
61 | "relationships_as_subject": [], | 68 | "relationships_as_subject": [], | ||
62 | "repository_name": "RADAR (Research Data Repository)", | 69 | "repository_name": "RADAR (Research Data Repository)", | ||
63 | "resource_type": "Dataset - genotypic data", | 70 | "resource_type": "Dataset - genotypic data", | ||
64 | "resources": [], | 71 | "resources": [], | ||
t | t | 72 | "services_used_list": "", | ||
65 | "source_metadata_created": "2020", | 73 | "source_metadata_created": "2020", | ||
66 | "source_metadata_modified": "", | 74 | "source_metadata_modified": "", | ||
67 | "state": "active", | 75 | "state": "active", | ||
68 | "subject_areas": [ | 76 | "subject_areas": [ | ||
69 | { | 77 | { | ||
70 | "subject_area_additional": "", | 78 | "subject_area_additional": "", | ||
71 | "subject_area_name": "Agriculture" | 79 | "subject_area_name": "Agriculture" | ||
72 | }, | 80 | }, | ||
73 | { | 81 | { | ||
74 | "subject_area_additional": "", | 82 | "subject_area_additional": "", | ||
75 | "subject_area_name": "Biology" | 83 | "subject_area_name": "Biology" | ||
76 | }, | 84 | }, | ||
77 | { | 85 | { | ||
78 | "subject_area_additional": "", | 86 | "subject_area_additional": "", | ||
79 | "subject_area_name": "Life Science" | 87 | "subject_area_name": "Life Science" | ||
80 | }, | 88 | }, | ||
81 | { | 89 | { | ||
82 | "subject_area_additional": "Genetics", | 90 | "subject_area_additional": "Genetics", | ||
83 | "subject_area_name": "Other" | 91 | "subject_area_name": "Other" | ||
84 | } | 92 | } | ||
85 | ], | 93 | ], | ||
86 | "tags": [ | 94 | "tags": [ | ||
87 | { | 95 | { | ||
88 | "display_name": "SNP", | 96 | "display_name": "SNP", | ||
89 | "id": "c9540cd0-ade4-4f17-b346-53f464a95aca", | 97 | "id": "c9540cd0-ade4-4f17-b346-53f464a95aca", | ||
90 | "name": "SNP", | 98 | "name": "SNP", | ||
91 | "state": "active", | 99 | "state": "active", | ||
92 | "vocabulary_id": null | 100 | "vocabulary_id": null | ||
93 | }, | 101 | }, | ||
94 | { | 102 | { | ||
95 | "display_name": "linkage disequilibrium", | 103 | "display_name": "linkage disequilibrium", | ||
96 | "id": "09e0799e-050c-45d3-8d56-165adc38a740", | 104 | "id": "09e0799e-050c-45d3-8d56-165adc38a740", | ||
97 | "name": "linkage disequilibrium", | 105 | "name": "linkage disequilibrium", | ||
98 | "state": "active", | 106 | "state": "active", | ||
99 | "vocabulary_id": null | 107 | "vocabulary_id": null | ||
100 | }, | 108 | }, | ||
101 | { | 109 | { | ||
102 | "display_name": "recombination rate", | 110 | "display_name": "recombination rate", | ||
103 | "id": "e1a030e0-2bf5-4171-aff1-2772f0f9a81a", | 111 | "id": "e1a030e0-2bf5-4171-aff1-2772f0f9a81a", | ||
104 | "name": "recombination rate", | 112 | "name": "recombination rate", | ||
105 | "state": "active", | 113 | "state": "active", | ||
106 | "vocabulary_id": null | 114 | "vocabulary_id": null | ||
107 | } | 115 | } | ||
108 | ], | 116 | ], | ||
109 | "title": "Updated results to publication \u201cestimation of | 117 | "title": "Updated results to publication \u201cestimation of | ||
110 | recombination rate and maternal linkage disequilibrium in | 118 | recombination rate and maternal linkage disequilibrium in | ||
111 | half-sibs\u201d (fron genet)", | 119 | half-sibs\u201d (fron genet)", | ||
112 | "type": "vdataset", | 120 | "type": "vdataset", | ||
113 | "url": "https://doi.org/10.22000/280" | 121 | "url": "https://doi.org/10.22000/280" | ||
114 | } | 122 | } |