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{
            
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  "author": "Lim, Yong Kian",
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  "author": "Lim, Yong Kian",
            
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  "author_email": "",
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  "author_email": "",
            
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  "citation": [],
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  "citation": [],
            
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            
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  "doi": "10.1594/PANGAEA.926944",
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  "doi": "10.1594/PANGAEA.926944",
            
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  "doi_date_published": "2021",
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  "doi_date_published": "2021",
            
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  "doi_publisher": "",
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  "doi_publisher": "",
            
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  "doi_status": "True",
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  "doi_status": "True",
            
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  "extra_authors": [
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  "extra_authors": [
            
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    {
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    {
            
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      "extra_author": "Cheung, Khan",
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      "extra_author": "Cheung, Khan",
            
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      "familyName": "Cheung",
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      "familyName": "Cheung",
            
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      "givenName": "Khan",
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      "givenName": "Khan",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Dang, Xin",
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      "extra_author": "Dang, Xin",
            
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      "familyName": "Dang",
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      "familyName": "Dang",
            
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      "givenName": "Xin",
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      "givenName": "Xin",
            
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      "orcid": "0000-0002-1035-1600"
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      "orcid": "0000-0002-1035-1600"
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Roberts, Steven B",
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      "extra_author": "Roberts, Steven B",
            
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      "familyName": "Roberts",
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      "familyName": "Roberts",
            
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      "givenName": "Steven B",
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      "givenName": "Steven B",
            
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      "orcid": "0000-0001-8302-1138"
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      "orcid": "0000-0001-8302-1138"
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Wang, Xiaotong",
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      "extra_author": "Wang, Xiaotong",
            
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      "familyName": "Wang",
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      "familyName": "Wang",
            
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      "givenName": "Xiaotong",
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      "givenName": "Xiaotong",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Thiyagarajan, Vengatesen",
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      "extra_author": "Thiyagarajan, Vengatesen",
            
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      "familyName": "Thiyagarajan",
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      "familyName": "Thiyagarajan",
            
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      "givenName": "Vengatesen",
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      "givenName": "Vengatesen",
            
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      "orcid": "0000-0002-2062-4799"
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      "orcid": "0000-0002-2062-4799"
            
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    }
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    }
            
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  ],
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  ],
            
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  "familyName": "Lim",
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  "familyName": "Lim",
            
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  "givenName": "Yong Kian",
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  "givenName": "Yong Kian",
            
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  "groups": [],
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  "isopen": false,
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  "isopen": false,
            
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  "license_id": "CC-BY-4.0",
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  "license_id": "CC-BY-4.0",
            
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  "license_title": "CC-BY-4.0",
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  "license_title": "CC-BY-4.0",
            
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  "metadata_created": "2024-11-29T11:46:36.945495",
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  "metadata_created": "2024-11-29T11:46:36.945495",
            
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  "metadata_modified": "2024-11-29T11:46:36.945501",
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  "metadata_modified": "2024-11-30T10:46:09.157116",
            
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  "name": "png-doi-10-1594-pangaea-926944",
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  "name": "png-doi-10-1594-pangaea-926944",
            
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  "notes": "Unprecedented rate of increased CO2 level in the ocean and 
52
  "notes": "Unprecedented rate of increased CO2 level in the ocean and 
            
53
the subsequent changes in carbonate system including decreased pH, 
53
the subsequent changes in carbonate system including decreased pH, 
            
54
known as ocean acidification (OA), is predicted to disrupt not only 
54
known as ocean acidification (OA), is predicted to disrupt not only 
            
55
the calcification process but also several other physiological and 
55
the calcification process but also several other physiological and 
            
56
developmental processes in a variety of marine organisms, including 
56
developmental processes in a variety of marine organisms, including 
            
57
edible oysters. Nonetheless, not all species are vulnerable to those 
57
edible oysters. Nonetheless, not all species are vulnerable to those 
            
58
OA threats, e.g. some species may be able to cope with OA stress using 
58
OA threats, e.g. some species may be able to cope with OA stress using 
            
59
environmentally induced modifications on gene and protein expressions. 
59
environmentally induced modifications on gene and protein expressions. 
            
60
For example, external environmental stressors including OA can 
60
For example, external environmental stressors including OA can 
            
61
influence the addition and removal of methyl groups through epigenetic 
61
influence the addition and removal of methyl groups through epigenetic 
            
62
modification (e.g. DNA methylation) process to turn gene expression 
62
modification (e.g. DNA methylation) process to turn gene expression 
            
63
\u201con or off\u201d as part of a rapid adaptive mechanism to cope 
63
\u201con or off\u201d as part of a rapid adaptive mechanism to cope 
            
64
with OA. In this study, we tested the above hypothesis through testing 
64
with OA. In this study, we tested the above hypothesis through testing 
            
65
the effect of OA, using decreased pH 7.4 as proxy, on DNA methylation 
65
the effect of OA, using decreased pH 7.4 as proxy, on DNA methylation 
            
66
pattern of an endemic and a commercially important estuary oyster 
66
pattern of an endemic and a commercially important estuary oyster 
            
67
species, Crassostrea hongkongensis at the time of larval habitat 
67
species, Crassostrea hongkongensis at the time of larval habitat 
            
68
selection and metamorphosis. Larval growth rate did not differ between 
68
selection and metamorphosis. Larval growth rate did not differ between 
            
69
control pH 8.1 and treatment pH 7.4. The metamorphosis rate of the 
69
control pH 8.1 and treatment pH 7.4. The metamorphosis rate of the 
            
70
pediveliger larvae was higher at pH 7.4 than those in control pH 8.1, 
70
pediveliger larvae was higher at pH 7.4 than those in control pH 8.1, 
            
71
however over one-third of the larvae raised at pH 7.4 failed to attach 
71
however over one-third of the larvae raised at pH 7.4 failed to attach 
            
72
on optimal substrate as defined by biofilm presence. During larval 
72
on optimal substrate as defined by biofilm presence. During larval 
            
73
development, a total of 130 genes were differentially methylated 
73
development, a total of 130 genes were differentially methylated 
            
74
across the two treatments. The differential methylation in the larval 
74
across the two treatments. The differential methylation in the larval 
            
75
genes may have partially accounted for the higher metamorphosis 
75
genes may have partially accounted for the higher metamorphosis 
            
76
success rate under decreased pH 7.4 but with poor substratum selection 
76
success rate under decreased pH 7.4 but with poor substratum selection 
            
77
ability. Differentially methylated loci were concentrated in the exon 
77
ability. Differentially methylated loci were concentrated in the exon 
            
78
regions and appear to be associated with cytoskeletal and signal 
78
regions and appear to be associated with cytoskeletal and signal 
            
79
transduction, oxidative stress, metabolic processes, and larval 
79
transduction, oxidative stress, metabolic processes, and larval 
            
80
metamorphosis, which implies the high potential of C. hongkongensis 
80
metamorphosis, which implies the high potential of C. hongkongensis 
            
81
larvae to acclimate and adapt through non-genetic ways to OA threats 
81
larvae to acclimate and adapt through non-genetic ways to OA threats 
            
82
within a single generation.",
82
within a single generation.",
            
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    "approval_status": "approved",
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    "approval_status": "approved",
            
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    "description": "PANGAEA (Data Publisher for Earth & Environmental 
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Science): The information system PANGAEA is operated as an Open Access 
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Science): The information system PANGAEA is operated as an Open Access 
            
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library aimed at archiving, publishing and distributing georeferenced 
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library aimed at archiving, publishing and distributing georeferenced 
            
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data from earth system research. PANGAEA guarantees long-term 
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data from earth system research. PANGAEA guarantees long-term 
            
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availability (greater than 10 years) of its content. PANGAEA is open 
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availability (greater than 10 years) of its content. PANGAEA is open 
            
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to any project, institution, or individual scientist to use or to 
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to any project, institution, or individual scientist to use or to 
            
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archive and publish data. PANGAEA focuses on georeferenced 
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archive and publish data. PANGAEA focuses on georeferenced 
            
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observational data, experimental data, and models/simulations. 
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observational data, experimental data, and models/simulations. 
            
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Citability, comprehensive metadata descriptions, interoperability of 
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Citability, comprehensive metadata descriptions, interoperability of 
            
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data and metadata, a high degree of structural and semantic 
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data and metadata, a high degree of structural and semantic 
            
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harmonization of the data inventory as well as the commitment of the 
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harmonization of the data inventory as well as the commitment of the 
            
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hosting institutions ensures FAIRness of archived data.",
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hosting institutions ensures FAIRness of archived data.",
            
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    "name": "pangaea_ecology",
            
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    "state": "active",
            
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  "publication_year": "2021",
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  "publication_year": "2021",
            
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  "related_identifiers": [
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  "related_identifiers": [
            
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    {
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    {
            
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      "authors": "Lim Yong Kian,Cheung Khan,Dang Xin,Roberts Steven 
114
      "authors": "Lim Yong Kian,Cheung Khan,Dang Xin,Roberts Steven 
            
115
B,Wang Xiaotong,Thiyagarajan Vengatesen,Gattuso Jean-Pierre,Epitalon 
115
B,Wang Xiaotong,Thiyagarajan Vengatesen,Gattuso Jean-Pierre,Epitalon 
            
116
Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr James,Gentili Bernard,Hagens 
116
Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr James,Gentili Bernard,Hagens 
            
117
Mathilde,Hofmann Andreas,Mueller Jens-Daniel,Proye Aur\u00e9lien,Rae 
117
Mathilde,Hofmann Andreas,Mueller Jens-Daniel,Proye Aur\u00e9lien,Rae 
            
118
James,Soetaert Karline",
118
James,Soetaert Karline",
            
119
      "email_authors": 
119
      "email_authors": 
            
120
lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
120
lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
            
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      "identifier": "https://doi.org/10.1016/j.marenvres.2020.105214",
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      "identifier": "https://doi.org/10.1016/j.marenvres.2020.105214",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": 
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      "orcid_authors": 
            
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4,,,,,0000-0003-3980-1043,,,,0000-0003-3904-2526,0000-0003-4603-7100",
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4,,,,,0000-0003-3980-1043,,,,0000-0003-3904-2526,0000-0003-4603-7100",
            
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      "relation_type": "References",
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      "relation_type": "References",
            
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      "source": "Marine Environmental Research",
126
      "source": "Marine Environmental Research",
            
127
      "title": "DNA methylation changes in response to ocean 
127
      "title": "DNA methylation changes in response to ocean 
            
128
acidification at the time of larval DNA metamorphosis in the edible 
128
acidification at the time of larval DNA metamorphosis in the edible 
            
129
oyster, Crassostrea hongkongensis",
129
oyster, Crassostrea hongkongensis",
            
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      "year": "2021"
130
      "year": "2021"
            
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    },
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    },
            
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    {
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    {
            
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      "authors": "Lim Yong Kian,Cheung Khan,Dang Xin,Roberts Steven 
133
      "authors": "Lim Yong Kian,Cheung Khan,Dang Xin,Roberts Steven 
            
134
B,Wang Xiaotong,Thiyagarajan Vengatesen,Gattuso Jean-Pierre,Epitalon 
134
B,Wang Xiaotong,Thiyagarajan Vengatesen,Gattuso Jean-Pierre,Epitalon 
            
135
Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr James,Gentili Bernard,Hagens 
135
Jean-Marie,Lavigne H\u00e9lo\u00efse,Orr James,Gentili Bernard,Hagens 
            
136
Mathilde,Hofmann Andreas,Mueller Jens-Daniel,Proye Aur\u00e9lien,Rae 
136
Mathilde,Hofmann Andreas,Mueller Jens-Daniel,Proye Aur\u00e9lien,Rae 
            
137
James,Soetaert Karline",
137
James,Soetaert Karline",
            
138
      "email_authors": 
138
      "email_authors": 
            
139
lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
139
lsce.ipsl.fr,bernard.gentili@orange.fr,,,,,,karline.soetaert@nioz.nl",
            
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      "identifier": "https://CRAN.R-project.org/package=seacarb",
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      "identifier": "https://CRAN.R-project.org/package=seacarb",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": 
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      "orcid_authors": 
            
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4,,,,,0000-0003-3980-1043,,,,0000-0003-3904-2526,0000-0003-4603-7100",
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4,,,,,0000-0003-3980-1043,,,,0000-0003-3904-2526,0000-0003-4603-7100",
            
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      "relation_type": "References",
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      "relation_type": "References",
            
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      "source": "",
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      "source": "",
            
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      "title": "seacarb: seawater carbonate chemistry with R. R 
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      "title": "seacarb: seawater carbonate chemistry with R. R 
            
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package version 3.2.14",
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package version 3.2.14",
            
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      "year": "2020"
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      "year": "2020"
            
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    }
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    }
            
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  ],
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  ],
            
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  "repository_name": "PANGAEA (Data Publisher for Earth & 
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  "repository_name": "PANGAEA (Data Publisher for Earth & 
            
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Environmental Science)",
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Environmental Science)",
            
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  "resource_type": "text/tab-separated-values - filename: 
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  "resource_type": "text/tab-separated-values - filename: 
            
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Lim-etal_2021_MER",
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Lim-etal_2021_MER",
            
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  "resources": [],
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  "resources": [],
            
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  "source_metadata_created": "2021",
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  "source_metadata_created": "2021",
            
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  "source_metadata_modified": "",
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  "source_metadata_modified": "",
            
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  "state": "active",
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  "state": "active",
            
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  "subject_areas": [
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "BiologicalClassification"
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      "subject_area_name": "BiologicalClassification"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Biosphere"
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      "subject_area_name": "Biosphere"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Chemistry"
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      "subject_area_name": "Chemistry"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Ecology"
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      "subject_area_name": "Ecology"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Oceans"
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    {
            
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      "name": "Reproduction",
            
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    {
            
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      "display_name": "Single species",
            
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      "name": "Single species",
            
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      "state": "active",
            
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    {
            
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      "display_name": "Temperate",
            
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      "id": "31aaeb0c-a4a5-4a8e-9c90-be1eff0cac91",
            
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      "name": "Temperate",
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      "name": "Temperate",
            
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      "state": "active",
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Zooplankton",
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      "display_name": "Zooplankton",
            
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      "id": "9a829b96-807f-48c1-84c6-8fa50a64f5a5",
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      "id": "9a829b96-807f-48c1-84c6-8fa50a64f5a5",
            
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      "name": "Zooplankton",
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    }
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    }
            
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  ],
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  ],
            
290
  "title": "Seawater carbonate chemistry and growth rate, larval 
304
  "title": "Seawater carbonate chemistry and growth rate, larval 
            
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attachment of edible oyster Crassostrea hongkongensis",
305
attachment of edible oyster Crassostrea hongkongensis",
            
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  "type": "vdataset",
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  "type": "vdataset",
            
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  "url": "https://doi.org/10.1594/PANGAEA.926944"
307
  "url": "https://doi.org/10.1594/PANGAEA.926944"
            
294
}
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}