Changes
On November 30, 2024 at 10:41:21 AM UTC, admin:
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Moved Gene expression changes in the coccolithophore Emiliania huxleyi after 500 generations of selection to ocean acidification from organization PANGAEA (Biosphere) to organization PANGAEA (Ecology)
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Removed tag Bottles or small containers-Aquaria 20 L from Gene expression changes in the coccolithophore Emiliania huxleyi after 500 generations of selection to ocean acidification
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Added the following tags to Gene expression changes in the coccolithophore Emiliania huxleyi after 500 generations of selection to ocean acidification
f | 1 | { | f | 1 | { |
2 | "author": "Lohbeck, Kai T", | 2 | "author": "Lohbeck, Kai T", | ||
3 | "author_email": "", | 3 | "author_email": "", | ||
4 | "citation": [], | 4 | "citation": [], | ||
5 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | 5 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | ||
6 | "doi": "10.1594/PANGAEA.832536", | 6 | "doi": "10.1594/PANGAEA.832536", | ||
7 | "doi_date_published": "2014", | 7 | "doi_date_published": "2014", | ||
8 | "doi_publisher": "", | 8 | "doi_publisher": "", | ||
9 | "doi_status": "True", | 9 | "doi_status": "True", | ||
10 | "extra_authors": [ | 10 | "extra_authors": [ | ||
11 | { | 11 | { | ||
12 | "extra_author": "Riebesell, Ulf", | 12 | "extra_author": "Riebesell, Ulf", | ||
13 | "familyName": "Riebesell", | 13 | "familyName": "Riebesell", | ||
14 | "givenName": "Ulf", | 14 | "givenName": "Ulf", | ||
15 | "orcid": "0000-0002-9442-452X" | 15 | "orcid": "0000-0002-9442-452X" | ||
16 | }, | 16 | }, | ||
17 | { | 17 | { | ||
18 | "extra_author": "Reusch, Thorsten B H", | 18 | "extra_author": "Reusch, Thorsten B H", | ||
19 | "familyName": "Reusch", | 19 | "familyName": "Reusch", | ||
20 | "givenName": "Thorsten B H", | 20 | "givenName": "Thorsten B H", | ||
21 | "orcid": "0000-0002-8961-4337" | 21 | "orcid": "0000-0002-8961-4337" | ||
22 | } | 22 | } | ||
23 | ], | 23 | ], | ||
24 | "familyName": "Lohbeck", | 24 | "familyName": "Lohbeck", | ||
25 | "givenName": "Kai T", | 25 | "givenName": "Kai T", | ||
26 | "groups": [], | 26 | "groups": [], | ||
27 | "id": "fefc73a7-c13b-43bf-b249-6a326cbac97b", | 27 | "id": "fefc73a7-c13b-43bf-b249-6a326cbac97b", | ||
28 | "isopen": false, | 28 | "isopen": false, | ||
29 | "license_id": "CC-BY-3.0", | 29 | "license_id": "CC-BY-3.0", | ||
30 | "license_title": "CC-BY-3.0", | 30 | "license_title": "CC-BY-3.0", | ||
31 | "metadata_created": "2024-11-29T11:44:48.278751", | 31 | "metadata_created": "2024-11-29T11:44:48.278751", | ||
n | 32 | "metadata_modified": "2024-11-29T11:44:48.278758", | n | 32 | "metadata_modified": "2024-11-30T10:41:21.598343", |
33 | "name": "png-doi-10-1594-pangaea-832536", | 33 | "name": "png-doi-10-1594-pangaea-832536", | ||
34 | "notes": "Coccolithophores are unicellular marine algae that produce | 34 | "notes": "Coccolithophores are unicellular marine algae that produce | ||
35 | biogenic calcite scales and substantially contribute to marine primary | 35 | biogenic calcite scales and substantially contribute to marine primary | ||
36 | production and carbon export to the deep ocean. Ongoing ocean | 36 | production and carbon export to the deep ocean. Ongoing ocean | ||
37 | acidification particularly impairs calcifying organisms, mostly | 37 | acidification particularly impairs calcifying organisms, mostly | ||
38 | resulting in decreased growth and calcification. Recent studies | 38 | resulting in decreased growth and calcification. Recent studies | ||
39 | revealed that the immediate physiological response in the | 39 | revealed that the immediate physiological response in the | ||
40 | coccolithophore Emiliania huxleyi to ocean acidification may be | 40 | coccolithophore Emiliania huxleyi to ocean acidification may be | ||
41 | partially compensated by evolutionary adaptation, yet the underlying | 41 | partially compensated by evolutionary adaptation, yet the underlying | ||
42 | molecular mechanisms are currently unknown. Here, we report on the | 42 | molecular mechanisms are currently unknown. Here, we report on the | ||
43 | expression levels of 10 candidate genes putatively relevant to pH | 43 | expression levels of 10 candidate genes putatively relevant to pH | ||
44 | regulation, carbon transport, calcification and photosynthesis in E. | 44 | regulation, carbon transport, calcification and photosynthesis in E. | ||
45 | huxleyi populations short-term exposed to ocean acidification | 45 | huxleyi populations short-term exposed to ocean acidification | ||
46 | conditions after acclimation (physiological response) and after 500 | 46 | conditions after acclimation (physiological response) and after 500 | ||
47 | generations of high CO2 adaptation (adaptive response). The | 47 | generations of high CO2 adaptation (adaptive response). The | ||
48 | physiological response revealed downregulation of candidate genes, | 48 | physiological response revealed downregulation of candidate genes, | ||
49 | well reflecting the concomitant decrease of growth and calcification. | 49 | well reflecting the concomitant decrease of growth and calcification. | ||
50 | In the adaptive response, putative pH regulation and carbon transport | 50 | In the adaptive response, putative pH regulation and carbon transport | ||
51 | genes were up-regulated, matching partial restoration of growth and | 51 | genes were up-regulated, matching partial restoration of growth and | ||
52 | calcification in high CO2-adapted populations. Adaptation to ocean | 52 | calcification in high CO2-adapted populations. Adaptation to ocean | ||
53 | acidification in E. huxleyi likely involved improved cellular pH | 53 | acidification in E. huxleyi likely involved improved cellular pH | ||
54 | regulation, presumably indirectly affecting calcification. Adaptive | 54 | regulation, presumably indirectly affecting calcification. Adaptive | ||
55 | evolution may thus have the potential to partially restore cellular pH | 55 | evolution may thus have the potential to partially restore cellular pH | ||
56 | regulatory capacity and thereby mitigate adverse effects of ocean | 56 | regulatory capacity and thereby mitigate adverse effects of ocean | ||
57 | acidification.", | 57 | acidification.", | ||
58 | "num_resources": 0, | 58 | "num_resources": 0, | ||
n | 59 | "num_tags": 11, | n | 59 | "num_tags": 12, |
60 | "orcid": "", | 60 | "orcid": "", | ||
61 | "organization": { | 61 | "organization": { | ||
62 | "approval_status": "approved", | 62 | "approval_status": "approved", | ||
n | 63 | "created": "2024-11-29T11:32:00.143130", | n | 63 | "created": "2024-11-30T10:25:26.439072", |
64 | "description": "PANGAEA (Data Publisher for Earth & Environmental | 64 | "description": "PANGAEA (Data Publisher for Earth & Environmental | ||
65 | Science): The information system PANGAEA is operated as an Open Access | 65 | Science): The information system PANGAEA is operated as an Open Access | ||
66 | library aimed at archiving, publishing and distributing georeferenced | 66 | library aimed at archiving, publishing and distributing georeferenced | ||
67 | data from earth system research. PANGAEA guarantees long-term | 67 | data from earth system research. PANGAEA guarantees long-term | ||
68 | availability (greater than 10 years) of its content. PANGAEA is open | 68 | availability (greater than 10 years) of its content. PANGAEA is open | ||
69 | to any project, institution, or individual scientist to use or to | 69 | to any project, institution, or individual scientist to use or to | ||
70 | archive and publish data. PANGAEA focuses on georeferenced | 70 | archive and publish data. PANGAEA focuses on georeferenced | ||
71 | observational data, experimental data, and models/simulations. | 71 | observational data, experimental data, and models/simulations. | ||
72 | Citability, comprehensive metadata descriptions, interoperability of | 72 | Citability, comprehensive metadata descriptions, interoperability of | ||
73 | data and metadata, a high degree of structural and semantic | 73 | data and metadata, a high degree of structural and semantic | ||
74 | harmonization of the data inventory as well as the commitment of the | 74 | harmonization of the data inventory as well as the commitment of the | ||
75 | hosting institutions ensures FAIRness of archived data.", | 75 | hosting institutions ensures FAIRness of archived data.", | ||
n | 76 | "id": "3226ef9c-20d1-43fd-ba8f-fa35c8c9fb5d", | n | 76 | "id": "c2816fc6-b5ce-42c9-b5a4-11709b658b82", |
77 | "image_url": "pangaea_topicbiosphere.png", | 77 | "image_url": "pangaea_topicecology.png", | ||
78 | "is_organization": true, | 78 | "is_organization": true, | ||
n | 79 | "name": "pangaea_biosphere", | n | 79 | "name": "pangaea_ecology", |
80 | "state": "active", | 80 | "state": "active", | ||
n | 81 | "title": "PANGAEA (Biosphere)", | n | 81 | "title": "PANGAEA (Ecology)", |
82 | "type": "organization" | 82 | "type": "organization" | ||
83 | }, | 83 | }, | ||
n | 84 | "owner_org": "3226ef9c-20d1-43fd-ba8f-fa35c8c9fb5d", | n | 84 | "owner_org": "c2816fc6-b5ce-42c9-b5a4-11709b658b82", |
85 | "private": false, | 85 | "private": false, | ||
86 | "publication_year": "2014", | 86 | "publication_year": "2014", | ||
87 | "related_identifiers": [ | 87 | "related_identifiers": [ | ||
88 | { | 88 | { | ||
89 | "authors": "Lohbeck Kai T,Riebesell Ulf,Reusch Thorsten B H", | 89 | "authors": "Lohbeck Kai T,Riebesell Ulf,Reusch Thorsten B H", | ||
90 | "email_authors": | 90 | "email_authors": | ||
91 | "kai.lohbeck@gmail.com,uriebesell@geomar.de,treusch@geomar.de", | 91 | "kai.lohbeck@gmail.com,uriebesell@geomar.de,treusch@geomar.de", | ||
92 | "identifier": "https://doi.org/10.1098/rspb.2014.0003", | 92 | "identifier": "https://doi.org/10.1098/rspb.2014.0003", | ||
93 | "identifier_type": "DOI", | 93 | "identifier_type": "DOI", | ||
94 | "orcid_authors": ",0000-0002-9442-452X,0000-0002-8961-4337", | 94 | "orcid_authors": ",0000-0002-9442-452X,0000-0002-8961-4337", | ||
95 | "relation_type": "IsSupplementTo", | 95 | "relation_type": "IsSupplementTo", | ||
96 | "source": "Proceedings of the Royal Society B-Biological | 96 | "source": "Proceedings of the Royal Society B-Biological | ||
97 | Sciences", | 97 | Sciences", | ||
98 | "title": "Gene expression changes in the coccolithophore | 98 | "title": "Gene expression changes in the coccolithophore | ||
99 | Emiliania huxleyi after 500 generations of selection to ocean | 99 | Emiliania huxleyi after 500 generations of selection to ocean | ||
100 | acidification", | 100 | acidification", | ||
101 | "year": "2014" | 101 | "year": "2014" | ||
102 | }, | 102 | }, | ||
103 | { | 103 | { | ||
104 | "authors": "Lavigne H\u00e9lo\u00efse,Epitalon | 104 | "authors": "Lavigne H\u00e9lo\u00efse,Epitalon | ||
105 | Jean-Marie,Gattuso Jean-Pierre", | 105 | Jean-Marie,Gattuso Jean-Pierre", | ||
106 | "email_authors": | 106 | "email_authors": | ||
107 | "hlavigne@naturalsciences.be,,jean-pierre.gattuso@imev-mer.fr", | 107 | "hlavigne@naturalsciences.be,,jean-pierre.gattuso@imev-mer.fr", | ||
108 | "identifier": "https://cran.r-project.org/package=seacarb", | 108 | "identifier": "https://cran.r-project.org/package=seacarb", | ||
109 | "identifier_type": "DOI", | 109 | "identifier_type": "DOI", | ||
110 | "orcid_authors": ",,0000-0002-4533-4114", | 110 | "orcid_authors": ",,0000-0002-4533-4114", | ||
111 | "relation_type": "References", | 111 | "relation_type": "References", | ||
112 | "source": "", | 112 | "source": "", | ||
113 | "title": "seacarb: seawater carbonate chemistry with R. R | 113 | "title": "seacarb: seawater carbonate chemistry with R. R | ||
114 | package version 3.0", | 114 | package version 3.0", | ||
115 | "year": "2014" | 115 | "year": "2014" | ||
116 | } | 116 | } | ||
117 | ], | 117 | ], | ||
118 | "relationships_as_object": [], | 118 | "relationships_as_object": [], | ||
119 | "relationships_as_subject": [], | 119 | "relationships_as_subject": [], | ||
120 | "repository_name": "PANGAEA (Data Publisher for Earth & | 120 | "repository_name": "PANGAEA (Data Publisher for Earth & | ||
121 | Environmental Science)", | 121 | Environmental Science)", | ||
122 | "resource_type": "text/tab-separated-values - filename: | 122 | "resource_type": "text/tab-separated-values - filename: | ||
123 | lohbeck_2014", | 123 | lohbeck_2014", | ||
124 | "resources": [], | 124 | "resources": [], | ||
125 | "source_metadata_created": "2014", | 125 | "source_metadata_created": "2014", | ||
126 | "source_metadata_modified": "", | 126 | "source_metadata_modified": "", | ||
127 | "state": "active", | 127 | "state": "active", | ||
128 | "subject_areas": [ | 128 | "subject_areas": [ | ||
129 | { | 129 | { | ||
130 | "subject_area_additional": "", | 130 | "subject_area_additional": "", | ||
131 | "subject_area_name": "BiologicalClassification" | 131 | "subject_area_name": "BiologicalClassification" | ||
132 | }, | 132 | }, | ||
133 | { | 133 | { | ||
134 | "subject_area_additional": "", | 134 | "subject_area_additional": "", | ||
135 | "subject_area_name": "Biosphere" | 135 | "subject_area_name": "Biosphere" | ||
136 | }, | 136 | }, | ||
137 | { | 137 | { | ||
138 | "subject_area_additional": "", | 138 | "subject_area_additional": "", | ||
139 | "subject_area_name": "Chemistry" | 139 | "subject_area_name": "Chemistry" | ||
140 | }, | 140 | }, | ||
141 | { | 141 | { | ||
142 | "subject_area_additional": "", | 142 | "subject_area_additional": "", | ||
143 | "subject_area_name": "Ecology" | 143 | "subject_area_name": "Ecology" | ||
144 | } | 144 | } | ||
145 | ], | 145 | ], | ||
146 | "tags": [ | 146 | "tags": [ | ||
147 | { | 147 | { | ||
t | t | 148 | "display_name": "Aquaria 20 L", | ||
149 | "id": "62c412c1-2294-406a-ad79-183330400def", | ||||
150 | "name": "Aquaria 20 L", | ||||
151 | "state": "active", | ||||
152 | "vocabulary_id": null | ||||
153 | }, | ||||
154 | { | ||||
148 | "display_name": "Bottles or small containers-Aquaria 20 L", | 155 | "display_name": "Bottles or small containers", | ||
149 | "id": "be154617-73a3-4ed4-b54f-69e22323c12a", | 156 | "id": "ba227243-af91-4efc-8086-790112e90e09", | ||
150 | "name": "Bottles or small containers-Aquaria 20 L", | 157 | "name": "Bottles or small containers", | ||
151 | "state": "active", | 158 | "state": "active", | ||
152 | "vocabulary_id": null | 159 | "vocabulary_id": null | ||
153 | }, | 160 | }, | ||
154 | { | 161 | { | ||
155 | "display_name": "Chromista", | 162 | "display_name": "Chromista", | ||
156 | "id": "36ecf721-e11a-4662-8783-da539c625d5c", | 163 | "id": "36ecf721-e11a-4662-8783-da539c625d5c", | ||
157 | "name": "Chromista", | 164 | "name": "Chromista", | ||
158 | "state": "active", | 165 | "state": "active", | ||
159 | "vocabulary_id": null | 166 | "vocabulary_id": null | ||
160 | }, | 167 | }, | ||
161 | { | 168 | { | ||
162 | "display_name": "Emiliania huxleyi", | 169 | "display_name": "Emiliania huxleyi", | ||
163 | "id": "4d880b33-55cb-4a0f-a1c1-796a5de0a031", | 170 | "id": "4d880b33-55cb-4a0f-a1c1-796a5de0a031", | ||
164 | "name": "Emiliania huxleyi", | 171 | "name": "Emiliania huxleyi", | ||
165 | "state": "active", | 172 | "state": "active", | ||
166 | "vocabulary_id": null | 173 | "vocabulary_id": null | ||
167 | }, | 174 | }, | ||
168 | { | 175 | { | ||
169 | "display_name": "Gene expression incl. proteomics", | 176 | "display_name": "Gene expression incl. proteomics", | ||
170 | "id": "a266e76f-1f2a-427a-97e6-8e248d591f17", | 177 | "id": "a266e76f-1f2a-427a-97e6-8e248d591f17", | ||
171 | "name": "Gene expression incl. proteomics", | 178 | "name": "Gene expression incl. proteomics", | ||
172 | "state": "active", | 179 | "state": "active", | ||
173 | "vocabulary_id": null | 180 | "vocabulary_id": null | ||
174 | }, | 181 | }, | ||
175 | { | 182 | { | ||
176 | "display_name": "Haptophyta", | 183 | "display_name": "Haptophyta", | ||
177 | "id": "8bf1fc3b-146a-4852-9542-74adf5d86d57", | 184 | "id": "8bf1fc3b-146a-4852-9542-74adf5d86d57", | ||
178 | "name": "Haptophyta", | 185 | "name": "Haptophyta", | ||
179 | "state": "active", | 186 | "state": "active", | ||
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182 | { | 189 | { | ||
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186 | "state": "active", | 193 | "state": "active", | ||
187 | "vocabulary_id": null | 194 | "vocabulary_id": null | ||
188 | }, | 195 | }, | ||
189 | { | 196 | { | ||
190 | "display_name": "Laboratory strains", | 197 | "display_name": "Laboratory strains", | ||
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192 | "name": "Laboratory strains", | 199 | "name": "Laboratory strains", | ||
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202 | }, | 209 | }, | ||
203 | { | 210 | { | ||
204 | "display_name": "Pelagos", | 211 | "display_name": "Pelagos", | ||
205 | "id": "012f5b69-4e75-4f54-8ac4-8bf192cafaa2", | 212 | "id": "012f5b69-4e75-4f54-8ac4-8bf192cafaa2", | ||
206 | "name": "Pelagos", | 213 | "name": "Pelagos", | ||
207 | "state": "active", | 214 | "state": "active", | ||
208 | "vocabulary_id": null | 215 | "vocabulary_id": null | ||
209 | }, | 216 | }, | ||
210 | { | 217 | { | ||
211 | "display_name": "Phytoplankton", | 218 | "display_name": "Phytoplankton", | ||
212 | "id": "9c357867-c046-43fa-ad3e-39f612d5622b", | 219 | "id": "9c357867-c046-43fa-ad3e-39f612d5622b", | ||
213 | "name": "Phytoplankton", | 220 | "name": "Phytoplankton", | ||
214 | "state": "active", | 221 | "state": "active", | ||
215 | "vocabulary_id": null | 222 | "vocabulary_id": null | ||
216 | }, | 223 | }, | ||
217 | { | 224 | { | ||
218 | "display_name": "Single species", | 225 | "display_name": "Single species", | ||
219 | "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d", | 226 | "id": "88de69be-3bdd-4cf8-b6a1-386d72c5888d", | ||
220 | "name": "Single species", | 227 | "name": "Single species", | ||
221 | "state": "active", | 228 | "state": "active", | ||
222 | "vocabulary_id": null | 229 | "vocabulary_id": null | ||
223 | } | 230 | } | ||
224 | ], | 231 | ], | ||
225 | "title": "Gene expression changes in the coccolithophore Emiliania | 232 | "title": "Gene expression changes in the coccolithophore Emiliania | ||
226 | huxleyi after 500 generations of selection to ocean acidification", | 233 | huxleyi after 500 generations of selection to ocean acidification", | ||
227 | "type": "vdataset", | 234 | "type": "vdataset", | ||
228 | "url": "https://doi.org/10.1594/PANGAEA.832536" | 235 | "url": "https://doi.org/10.1594/PANGAEA.832536" | ||
229 | } | 236 | } |