Changes

              
    

          
          
        
        

            
f
1
{
f
1
{
            
2
  "author": "Tait, Karen",
2
  "author": "Tait, Karen",
            
3
  "author_email": "",
3
  "author_email": "",
            
4
  "citation": [],
4
  "citation": [],
            
5
  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
5
  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            
6
  "doi": "10.1594/PANGAEA.769754",
6
  "doi": "10.1594/PANGAEA.769754",
            
7
  "doi_date_published": "2014",
7
  "doi_date_published": "2014",
            
8
  "doi_publisher": "",
8
  "doi_publisher": "",
            
9
  "doi_status": "True",
9
  "doi_status": "True",
            
10
  "extra_authors": [
10
  "extra_authors": [
            
11
    {
11
    {
            
12
      "extra_author": "Laverock, Bonnie",
12
      "extra_author": "Laverock, Bonnie",
            
13
      "familyName": "Laverock",
13
      "familyName": "Laverock",
            
14
      "givenName": "Bonnie",
14
      "givenName": "Bonnie",
            
15
      "orcid": "0000-0002-9749-0338"
15
      "orcid": "0000-0002-9749-0338"
            
16
    },
16
    },
            
17
    {
17
    {
            
18
      "extra_author": "Widdicombe, Stephen",
18
      "extra_author": "Widdicombe, Stephen",
            
19
      "familyName": "Widdicombe",
19
      "familyName": "Widdicombe",
            
20
      "givenName": "Stephen",
20
      "givenName": "Stephen",
            
21
      "orcid": ""
21
      "orcid": ""
            
22
    }
22
    }
            
23
  ],
23
  ],
            
24
  "familyName": "Tait",
24
  "familyName": "Tait",
            
25
  "givenName": "Karen",
25
  "givenName": "Karen",
            
26
  "groups": [],
26
  "groups": [],
            
27
  "id": "41e22819-115a-461e-92d2-305421cf9e00",
27
  "id": "41e22819-115a-461e-92d2-305421cf9e00",
            
28
  "isopen": false,
28
  "isopen": false,
            
29
  "license_id": "CC-BY-3.0",
29
  "license_id": "CC-BY-3.0",
            
30
  "license_title": "CC-BY-3.0",
30
  "license_title": "CC-BY-3.0",
            
31
  "metadata_created": "2024-11-29T11:34:22.306007",
31
  "metadata_created": "2024-11-29T11:34:22.306007",
            
n
32
  "metadata_modified": "2024-11-29T11:34:22.306012",
n
32
  "metadata_modified": "2024-11-30T10:39:44.711014",
            
33
  "name": "png-doi-10-1594-pangaea-769754",
33
  "name": "png-doi-10-1594-pangaea-769754",
            
34
  "notes": "Ocean acidification influences sediment/water nitrogen 
34
  "notes": "Ocean acidification influences sediment/water nitrogen 
            
35
fluxes, possibly by impacting on the microbial process of ammonia 
35
fluxes, possibly by impacting on the microbial process of ammonia 
            
36
oxidation. To investigate this further, undisturbed sediment cores 
36
oxidation. To investigate this further, undisturbed sediment cores 
            
37
collected from Ny Alesund harbour (Svalbard) were incubated with 
37
collected from Ny Alesund harbour (Svalbard) were incubated with 
            
38
seawater adjusted to CO2 concentrations of 380, 540, 760, 1,120 and 
38
seawater adjusted to CO2 concentrations of 380, 540, 760, 1,120 and 
            
39
3,000 \u00b5atm. DNA and RNA were extracted from the sediment surface 
39
3,000 \u00b5atm. DNA and RNA were extracted from the sediment surface 
            
40
after 14 days' exposure and the abundance of bacterial and archaeal 
40
after 14 days' exposure and the abundance of bacterial and archaeal 
            
41
ammonia oxidising (amoA) genes and transcripts quantified using 
41
ammonia oxidising (amoA) genes and transcripts quantified using 
            
42
quantitative polymerase chain reaction. While there was no change to 
42
quantitative polymerase chain reaction. While there was no change to 
            
43
the abundance of bacterial amoA genes, an increase to 760 \u00b5atm 
43
the abundance of bacterial amoA genes, an increase to 760 \u00b5atm 
            
44
pCO2 reduced the abundance of bacterial amoA transcripts by 65 %, and 
44
pCO2 reduced the abundance of bacterial amoA transcripts by 65 %, and 
            
45
this was accompanied by a shift in the composition of the active 
45
this was accompanied by a shift in the composition of the active 
            
46
community. In contrast, archaeal amoA gene and transcript abundance 
46
community. In contrast, archaeal amoA gene and transcript abundance 
            
47
both doubled at 3,000 \u00b5atm, with an increase in species richness 
47
both doubled at 3,000 \u00b5atm, with an increase in species richness 
            
48
also apparent. This suggests that ammonia oxidising bacteria and 
48
also apparent. This suggests that ammonia oxidising bacteria and 
            
49
archaea in marine sediments have different pH optima, and the impact 
49
archaea in marine sediments have different pH optima, and the impact 
            
50
of elevated CO2 on N cycling may be dependent on the relative 
50
of elevated CO2 on N cycling may be dependent on the relative 
            
51
abundances of these two major microbial groups. Further evidence of a 
51
abundances of these two major microbial groups. Further evidence of a 
            
52
shift in the balance of key N cycling groups was also evident: the 
52
shift in the balance of key N cycling groups was also evident: the 
            
53
abundance of nirS-type denitrifier transcripts decreased alongside 
53
abundance of nirS-type denitrifier transcripts decreased alongside 
            
54
bacterial amoA transcripts, indicating that NO3 ? produced by 
54
bacterial amoA transcripts, indicating that NO3 ? produced by 
            
55
bacterial nitrification fuelled denitrification. An increase in the 
55
bacterial nitrification fuelled denitrification. An increase in the 
            
56
abundance of Planctomycete-specific 16S rRNA, the vast majority of 
56
abundance of Planctomycete-specific 16S rRNA, the vast majority of 
            
57
which grouped with known anammox bacteria, was also apparent at 3,000 
57
which grouped with known anammox bacteria, was also apparent at 3,000 
            
58
\u00b5atm pCO2. This could indicate a possible shift from coupled 
58
\u00b5atm pCO2. This could indicate a possible shift from coupled 
            
59
nitrification-denitrification to anammox activity at elevated CO2.",
59
nitrification-denitrification to anammox activity at elevated CO2.",
            
60
  "num_resources": 0,
60
  "num_resources": 0,
            
n
61
  "num_tags": 9,
n
61
  "num_tags": 11,
            
62
  "orcid": "0000-0001-8137-6998",
62
  "orcid": "0000-0001-8137-6998",
            
63
  "organization": {
63
  "organization": {
            
64
    "approval_status": "approved",
64
    "approval_status": "approved",
            
n
65
    "created": "2024-11-29T11:32:00.143130",
n
65
    "created": "2024-11-30T10:25:26.439072",
            
66
    "description": "PANGAEA (Data Publisher for Earth & Environmental 
66
    "description": "PANGAEA (Data Publisher for Earth & Environmental 
            
67
Science): The information system PANGAEA is operated as an Open Access 
67
Science): The information system PANGAEA is operated as an Open Access 
            
68
library aimed at archiving, publishing and distributing georeferenced 
68
library aimed at archiving, publishing and distributing georeferenced 
            
69
data from earth system research. PANGAEA guarantees long-term 
69
data from earth system research. PANGAEA guarantees long-term 
            
70
availability (greater than 10 years) of its content. PANGAEA is open 
70
availability (greater than 10 years) of its content. PANGAEA is open 
            
71
to any project, institution, or individual scientist to use or to 
71
to any project, institution, or individual scientist to use or to 
            
72
archive and publish data. PANGAEA focuses on georeferenced 
72
archive and publish data. PANGAEA focuses on georeferenced 
            
73
observational data, experimental data, and models/simulations. 
73
observational data, experimental data, and models/simulations. 
            
74
Citability, comprehensive metadata descriptions, interoperability of 
74
Citability, comprehensive metadata descriptions, interoperability of 
            
75
data and metadata, a high degree of structural and semantic 
75
data and metadata, a high degree of structural and semantic 
            
76
harmonization of the data inventory as well as the commitment of the 
76
harmonization of the data inventory as well as the commitment of the 
            
77
hosting institutions ensures FAIRness of archived data.",
77
hosting institutions ensures FAIRness of archived data.",
            
n
78
    "id": "3226ef9c-20d1-43fd-ba8f-fa35c8c9fb5d",
n
78
    "id": "c2816fc6-b5ce-42c9-b5a4-11709b658b82",
            
79
    "image_url": "pangaea_topicbiosphere.png",
79
    "image_url": "pangaea_topicecology.png",
            
80
    "is_organization": true,
80
    "is_organization": true,
            
n
81
    "name": "pangaea_biosphere",
n
81
    "name": "pangaea_ecology",
            
82
    "state": "active",
82
    "state": "active",
            
n
83
    "title": "PANGAEA (Biosphere)",
n
83
    "title": "PANGAEA (Ecology)",
            
84
    "type": "organization"
84
    "type": "organization"
            
85
  },
85
  },
            
n
86
  "owner_org": "3226ef9c-20d1-43fd-ba8f-fa35c8c9fb5d",
n
86
  "owner_org": "c2816fc6-b5ce-42c9-b5a4-11709b658b82",
            
87
  "private": false,
87
  "private": false,
            
88
  "publication_year": "2014",
88
  "publication_year": "2014",
            
89
  "related_identifiers": [
89
  "related_identifiers": [
            
90
    {
90
    {
            
91
      "authors": "Tait Karen,Laverock Bonnie,Widdicombe Stephen",
91
      "authors": "Tait Karen,Laverock Bonnie,Widdicombe Stephen",
            
92
      "email_authors": 
92
      "email_authors": 
            
93
"ktait@pml.ac.uk,bonnie.laverock@uwa.edu.au,swi@pml.ac.uk",
93
"ktait@pml.ac.uk,bonnie.laverock@uwa.edu.au,swi@pml.ac.uk",
            
94
      "identifier": "https://doi.org/10.1007/s12237-013-9709-x",
94
      "identifier": "https://doi.org/10.1007/s12237-013-9709-x",
            
95
      "identifier_type": "DOI",
95
      "identifier_type": "DOI",
            
96
      "orcid_authors": "0000-0001-8137-6998,0000-0002-9749-0338,",
96
      "orcid_authors": "0000-0001-8137-6998,0000-0002-9749-0338,",
            
97
      "relation_type": "IsSupplementTo",
97
      "relation_type": "IsSupplementTo",
            
98
      "source": "Estuaries and Coasts",
98
      "source": "Estuaries and Coasts",
            
99
      "title": "Response of an Arctic Sediment Nitrogen Cycling 
99
      "title": "Response of an Arctic Sediment Nitrogen Cycling 
            
100
Community to Increased CO2",
100
Community to Increased CO2",
            
101
      "year": "2013"
101
      "year": "2013"
            
102
    },
102
    },
            
103
    {
103
    {
            
104
      "authors": "Lavigne H\u00e9lo\u00efse,Epitalon 
104
      "authors": "Lavigne H\u00e9lo\u00efse,Epitalon 
            
105
Jean-Marie,Gattuso Jean-Pierre",
105
Jean-Marie,Gattuso Jean-Pierre",
            
106
      "email_authors": 
106
      "email_authors": 
            
107
"hlavigne@naturalsciences.be,,jean-pierre.gattuso@imev-mer.fr",
107
"hlavigne@naturalsciences.be,,jean-pierre.gattuso@imev-mer.fr",
            
108
      "identifier": "https://cran.r-project.org/package=seacarb",
108
      "identifier": "https://cran.r-project.org/package=seacarb",
            
109
      "identifier_type": "DOI",
109
      "identifier_type": "DOI",
            
110
      "orcid_authors": ",,0000-0002-4533-4114",
110
      "orcid_authors": ",,0000-0002-4533-4114",
            
111
      "relation_type": "References",
111
      "relation_type": "References",
            
112
      "source": "",
112
      "source": "",
            
113
      "title": "seacarb: seawater carbonate chemistry with R. R 
113
      "title": "seacarb: seawater carbonate chemistry with R. R 
            
114
package version 3.0",
114
package version 3.0",
            
115
      "year": "2014"
115
      "year": "2014"
            
116
    }
116
    }
            
117
  ],
117
  ],
            
118
  "relationships_as_object": [],
118
  "relationships_as_object": [],
            
119
  "relationships_as_subject": [],
119
  "relationships_as_subject": [],
            
120
  "repository_name": "PANGAEA (Data Publisher for Earth & 
120
  "repository_name": "PANGAEA (Data Publisher for Earth & 
            
121
Environmental Science)",
121
Environmental Science)",
            
122
  "resource_type": "text/tab-separated-values - filename: 
122
  "resource_type": "text/tab-separated-values - filename: 
            
123
Svalbard2009Serripes",
123
Svalbard2009Serripes",
            
124
  "resources": [],
124
  "resources": [],
            
125
  "source_metadata_created": "2014",
125
  "source_metadata_created": "2014",
            
126
  "source_metadata_modified": "",
126
  "source_metadata_modified": "",
            
127
  "state": "active",
127
  "state": "active",
            
128
  "subject_areas": [
128
  "subject_areas": [
            
129
    {
129
    {
            
130
      "subject_area_additional": "",
130
      "subject_area_additional": "",
            
131
      "subject_area_name": "Biosphere"
131
      "subject_area_name": "Biosphere"
            
132
    },
132
    },
            
133
    {
133
    {
            
134
      "subject_area_additional": "",
134
      "subject_area_additional": "",
            
135
      "subject_area_name": "Chemistry"
135
      "subject_area_name": "Chemistry"
            
136
    },
136
    },
            
137
    {
137
    {
            
138
      "subject_area_additional": "",
138
      "subject_area_additional": "",
            
139
      "subject_area_name": "Ecology"
139
      "subject_area_name": "Ecology"
            
140
    },
140
    },
            
141
    {
141
    {
            
142
      "subject_area_additional": "",
142
      "subject_area_additional": "",
            
143
      "subject_area_name": "Oceans"
143
      "subject_area_name": "Oceans"
            
144
    }
144
    }
            
145
  ],
145
  ],
            
146
  "tags": [
146
  "tags": [
            
147
    {
147
    {
            
n
n
148
      "display_name": "1000 L or  1 m2",
            
149
      "id": "d920ecdb-c44e-43f2-bb4c-ffdc3a3c398c",
            
150
      "name": "1000 L or  1 m2",
            
151
      "state": "active",
            
152
      "vocabulary_id": null
            
153
    },
            
154
    {
            
148
      "display_name": "Arctic",
155
      "display_name": "Arctic",
            
149
      "id": "66e033a6-e693-487f-ae14-6719e169bac5",
156
      "id": "66e033a6-e693-487f-ae14-6719e169bac5",
            
150
      "name": "Arctic",
157
      "name": "Arctic",
            
151
      "state": "active",
158
      "state": "active",
            
152
      "vocabulary_id": null
159
      "vocabulary_id": null
            
153
    },
160
    },
            
154
    {
161
    {
            
155
      "display_name": "Benthos",
162
      "display_name": "Benthos",
            
156
      "id": "55bc70f2-ff73-4d9a-89f6-16358d0d9b87",
163
      "id": "55bc70f2-ff73-4d9a-89f6-16358d0d9b87",
            
157
      "name": "Benthos",
164
      "name": "Benthos",
            
158
      "state": "active",
165
      "state": "active",
            
159
      "vocabulary_id": null
166
      "vocabulary_id": null
            
160
    },
167
    },
            
161
    {
168
    {
            
162
      "display_name": "Coast and continental shelf",
169
      "display_name": "Coast and continental shelf",
            
163
      "id": "58eb1929-34b5-4fd9-ac44-824f0e51de40",
170
      "id": "58eb1929-34b5-4fd9-ac44-824f0e51de40",
            
164
      "name": "Coast and continental shelf",
171
      "name": "Coast and continental shelf",
            
165
      "state": "active",
172
      "state": "active",
            
166
      "vocabulary_id": null
173
      "vocabulary_id": null
            
167
    },
174
    },
            
168
    {
175
    {
            
n
169
      "display_name": "Containers and aquaria 20-1000 L or  1 m2",
n
176
      "display_name": "Containers and aquaria 20",
            
170
      "id": "a9d9036d-3fe8-4fb1-bcb9-07b8a3a3fe11",
177
      "id": "18d57eca-7aec-4d8a-9a57-92bf32a45d53",
            
171
      "name": "Containers and aquaria 20-1000 L or  1 m2",
178
      "name": "Containers and aquaria 20",
            
172
      "state": "active",
179
      "state": "active",
            
173
      "vocabulary_id": null
180
      "vocabulary_id": null
            
174
    },
181
    },
            
175
    {
182
    {
            
176
      "display_name": "Entire community",
183
      "display_name": "Entire community",
            
177
      "id": "6e1a8708-bc7c-4fa2-af8d-8a3c7bf9112a",
184
      "id": "6e1a8708-bc7c-4fa2-af8d-8a3c7bf9112a",
            
178
      "name": "Entire community",
185
      "name": "Entire community",
            
179
      "state": "active",
186
      "state": "active",
            
180
      "vocabulary_id": null
187
      "vocabulary_id": null
            
181
    },
188
    },
            
182
    {
189
    {
            
183
      "display_name": "Gene expression incl. proteomics",
190
      "display_name": "Gene expression incl. proteomics",
            
184
      "id": "a266e76f-1f2a-427a-97e6-8e248d591f17",
191
      "id": "a266e76f-1f2a-427a-97e6-8e248d591f17",
            
185
      "name": "Gene expression incl. proteomics",
192
      "name": "Gene expression incl. proteomics",
            
186
      "state": "active",
193
      "state": "active",
            
187
      "vocabulary_id": null
194
      "vocabulary_id": null
            
188
    },
195
    },
            
189
    {
196
    {
            
190
      "display_name": "Laboratory experiment",
197
      "display_name": "Laboratory experiment",
            
191
      "id": "c6c00754-c769-4932-a517-bff2c9512884",
198
      "id": "c6c00754-c769-4932-a517-bff2c9512884",
            
192
      "name": "Laboratory experiment",
199
      "name": "Laboratory experiment",
            
193
      "state": "active",
200
      "state": "active",
            
194
      "vocabulary_id": null
201
      "vocabulary_id": null
            
195
    },
202
    },
            
196
    {
203
    {
            
197
      "display_name": "Polar",
204
      "display_name": "Polar",
            
198
      "id": "42c64bec-e6be-4482-b2fb-61f7a4526407",
205
      "id": "42c64bec-e6be-4482-b2fb-61f7a4526407",
            
199
      "name": "Polar",
206
      "name": "Polar",
            
200
      "state": "active",
207
      "state": "active",
            
201
      "vocabulary_id": null
208
      "vocabulary_id": null
            
202
    },
209
    },
            
203
    {
210
    {
            
t
t
211
      "display_name": "Soft",
            
212
      "id": "ef17379d-2638-4b73-9d0e-7b501f68c148",
            
213
      "name": "Soft",
            
214
      "state": "active",
            
215
      "vocabulary_id": null
            
216
    },
            
217
    {
            
204
      "display_name": "Soft-bottom community",
218
      "display_name": "bottom community",
            
205
      "id": "7b1e2b88-0df6-4587-bded-47e31e4a1282",
219
      "id": "690b4d80-621f-4861-8e21-fab7445f3365",
            
206
      "name": "Soft-bottom community",
220
      "name": "bottom community",
            
207
      "state": "active",
221
      "state": "active",
            
208
      "vocabulary_id": null
222
      "vocabulary_id": null
            
209
    }
223
    }
            
210
  ],
224
  ],
            
211
  "title": "EPOCA Svalbard 2009 benthic experiment: Serripes study, 
225
  "title": "EPOCA Svalbard 2009 benthic experiment: Serripes study, 
            
212
2009",
226
2009",
            
213
  "type": "vdataset",
227
  "type": "vdataset",
            
214
  "url": "https://doi.org/10.1594/PANGAEA.769754"
228
  "url": "https://doi.org/10.1594/PANGAEA.769754"
            
215
}
229
}