Eukaryotic microbial community at the LTER site Helgoland Roads from March 2016 to March 2019

Water samples were collected from the long-term ecological research (LTER) site at Helgoland and the eukaryotic microbial community was assessed. 18S V4 region was amplified using the primer set 528iF /964iR and amplicon sequencing was performed on an Illumina MiSeq™ sequencer in a 2 × 300 bp paired-end run. Sequence data have been deposited in the European Nucleotide Archive (ENA) at the European Bioinformatics Institute (EMBL-EBI) under accession number PRJEB37135 using the data brokerage service of the German Federation for Biological Data (GFBio). 21 million sequences remained after bioinformatic processing and were clustered into Operational Taxonomic Units (OTUs). The Protist Ribosomal Reference database (PR2), version 4.11.1 was used as reference database.

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Cite this as

Käse, Laura, Kraberg, Alexandra Claudia, Metfies, Katja, Neuhaus, Stefan, Sprong, Pim, Fuchs, Bernhard M, Boersma, Maarten, Wiltshire, Karen Helen (2020). Dataset: Eukaryotic microbial community at the LTER site Helgoland Roads from March 2016 to March 2019. https://doi.org/10.1594/PANGAEA.921026

DOI retrieved: 2020

Additional Info

Field Value
Imported on November 29, 2024
Last update November 29, 2024
License CC-BY-4.0
Source https://doi.org/10.1594/PANGAEA.921026
Author Käse, Laura
Given Name Laura
Family Name Käse
More Authors
Kraberg, Alexandra Claudia
Metfies, Katja
Neuhaus, Stefan
Sprong, Pim
Fuchs, Bernhard M
Boersma, Maarten
Wiltshire, Karen Helen
Source Creation 2020
Publication Year 2020
Resource Type text/tab-separated-values - filename: Kaese_etal_2020
Subject Areas
Name: Biosphere

Name: Fisheries

Name: Oceans

Related Identifiers
Title: Metabarcoding analysis suggests that flexible food web interactions in the eukaryotic plankton community are more common than specific predator-prey relationships at Helgoland Roads, North Sea
Identifier: https://doi.org/10.1093/icesjms/fsab058
Type: DOI
Relation: References
Year: 2021
Source: ICES Journal of Marine Science
Authors: Käse Laura , Metfies Katja , Kraberg Alexandra Claudia , Neuhaus Stefan , Meunier Cédric Léo , Wiltshire Karen Helen , Boersma Maarten , Käse Laura , Metfies Katja , Neuhaus Stefan , Boersma Maarten , Wiltshire Karen Helen , Kraberg Alexandra Claudia , Neuhaus Stefan , Käse Laura , Kraberg Alexandra Claudia , Metfies Katja , Sprong Pim , Fuchs Bernhard M , Boersma Maarten , Wiltshire Karen Helen .

Title: Host-parasitoid associations in marine planktonic time series: Can metabarcoding help reveal them?
Identifier: https://doi.org/10.1371/journal.pone.0244817
Type: DOI
Relation: References
Year: 2021
Source: PLoS ONE
Authors: Käse Laura , Metfies Katja , Kraberg Alexandra Claudia , Neuhaus Stefan , Meunier Cédric Léo , Wiltshire Karen Helen , Boersma Maarten , Käse Laura , Metfies Katja , Neuhaus Stefan , Boersma Maarten , Wiltshire Karen Helen , Kraberg Alexandra Claudia , Neuhaus Stefan , Käse Laura , Kraberg Alexandra Claudia , Metfies Katja , Sprong Pim , Fuchs Bernhard M , Boersma Maarten , Wiltshire Karen Helen .

Title: Eukaryotic microbial community at the LTER site Helgoland Roads
Identifier: insdc:PRJEB37135
Type: DOI
Relation: References
Year: 2020
Source: European Nucleotide Archive (ENA)
Authors: Käse Laura , Metfies Katja , Kraberg Alexandra Claudia , Neuhaus Stefan , Meunier Cédric Léo , Wiltshire Karen Helen , Boersma Maarten , Käse Laura , Metfies Katja , Neuhaus Stefan , Boersma Maarten , Wiltshire Karen Helen , Kraberg Alexandra Claudia , Neuhaus Stefan , Käse Laura , Kraberg Alexandra Claudia , Metfies Katja , Sprong Pim , Fuchs Bernhard M , Boersma Maarten , Wiltshire Karen Helen .