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Comparison to Other Metagenomic Profiling Methods
The dataset used for the comparison to other metagenomic profiling methods is the same data and metrics used by other authors in a recent metagenomics methods evaluation paper... -
METAPALETTE
The software implementing MetaPalette is available at: https://github.com/dkoslicki/MetaPalette. Pre-trained databases are included for Archaea, Bacteria, Eukaryota, and viruses. -
DNABERT-S: LEARNING SPECIES-AWARE DNA EMBEDDING WITH GENOME FOUNDATION MODELS
DNABERT-S is a genome foundation model designed to generate effective, species-aware DNA embeddings. The model uses a combination of Manifold Instance Mixup and Curriculum...
