Protein-Protein Interactions - Groups

Protein Structure Data from PDB

The dataset used in this study is a collection of protein structure data from the Protein Data Bank (PDB), which is used to infer the interactions between protein subunits.

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Protein-Protein Interactions (PPI) dataset

The Protein-Protein Interactions (PPI) dataset is a subgraph of the PPI network for Homo sapiens.

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HuRI-PPI

The dataset contains 5,604 proteins and 23,322 interactions generated by multiple orthogonal high-throughput yeast two-hybrid screens.

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SARS-CoV-2 RBD binding affinity dataset

The dataset used in the paper for predicting the effects of mutations on protein-protein binding.

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SKEMPI2 dataset

The dataset used in the paper for predicting mutational effects on protein-protein binding.

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BioGRID

The dataset used for training the PPI transformer network, containing 31,869 experimentally-validated positive virus-human interactions and 34,836 negative interactions.

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AIMed dataset

The AIMed dataset includes more than 2,000 text segments from PubMed abstracts in which protein-protein interactions are annotated.

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7 datasets found