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RIPE dataset
The dataset used in the paper is a combination of perturbation screens and steady-state gene expression data. -
High Fitness Gene Regulatory Networks
The dataset is a collection of gene regulatory networks (GRNs) with high fitness, used to investigate the evolution of mutational robustness and bistability. -
Reference Ensemble of Gene Regulatory Networks
The dataset is a reference ensemble of gene regulatory networks (GRNs) generated using the multicanonical Monte Carlo method. The ensemble is used to compare with the outcomes... -
Predicting gene expression levels from epigenetic data for a given gene regul...
Gene expression levels can be accurately predicted from methylation state of a promoter region and a GRN. -
SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks
SERGIO is a technique for simulating single-cell RNA sequencing dynamics using stochastic differential equations.
