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eBDIMS server
The eBDIMS server generates transition pathways between protein end-states, and allows for validation and rational analysis within the conformational landscape defined from... -
Amino acid sequences
Amino acid sequences used in experiments -
Two-phase protein folding optimization on a 3D AB off-lattice model
Two-phase optimization for protein folding optimization on a three-dimensional AB off-lattice model -
SGNet: Folding Symmetrical Protein Complex with Deep Learning
The SGNet dataset is a benchmark for symmetrical protein complex structure prediction. It contains a set of symmetrical protein complexes with different symmetry types (C, D, T,... -
Protein homology dataset
Protein homology dataset (KDD Cup 2004), with binary-valued features. -
BACKDIFF: A DIFFUSION MODEL FOR GENERALIZED TRANSFERABLE PROTEIN BACKMAPPING
Coarse-grained protein models play a crucial role in the study of protein structures, protein thermodynamic properties, and protein conformation dynamics. -
Impact of protein conformational diversity on alphafold predictions
Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational... -
Fold-switching proteins and ligand-induced conformational change
Fold-switching proteins and ligand-induced conformational change. -
EIGENFOLD: Generative Protein Structure Prediction with Diffusion Models
Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational... -
TS50 and T500 datasets for training and testing protein structure prediction ...
TS50 and T500 datasets for training and testing protein structure prediction models. -
CASP12 dataset
The CASP12 dataset is a benchmark for protein structure prediction. -
FIV protease peptides
Dataset of native and non-native peptides for HIV and FIV proteases -
HIV and FIV protease peptides
Dataset of native and non-native peptides for HIV and FIV proteases -
Protein Structure Prediction
The dataset used in the paper for protein structure prediction. -
AlphaFoldDB
The dataset used in the paper for secondary structure-guided novel protein sequence generation with latent graph diffusion. -
Protein Datasets
The protein datasets consist of 500 high-resolution proteins and 113 selected RNA sequences.
