39 datasets found

Physicochemical Properties of Protein Tertiary Structure Data Set. UCI Machine Learning Repository, https://doi.org/10.24432/C5QW3H.

The Gene Ontology aims to define the universe of functions known for gene products, at the molecular, cellular and organism levels.

The CASP dataset was used for testing. The dataset contains 96 template-free proteins and 90 template-based proteins.

The SCOP 2.06 dataset was used for testing. The dataset contains 4,188 domains, covering 550 folds.

The SCOP 1.75 dataset was used for training and validation. The dataset contains 16,712 proteins covering 7 major structural classes with total 1,195 identified folds.

Protein fold recognition is an important problem in structural bioinformatics. Almost all traditional fold recognition methods use sequence (homology) comparison to indirectly...

COBS is a compact bit-sliced signature index for approximate pattern matching on large q-gram datasets.

Single-cell RNA sequencing (scRNA-seq) has transformed our ability to explore biological systems. Nevertheless, proficient expertise is essential for handling and interpreting...

PDBj is a database of protein structures. It provides access to protein structures and tools for analysis.

MEGADOCK is a software for protein-protein docking and PPI prediction. It uses FFT calculation and is implemented using C++.

MEGADOCK-GUI is a GUI-based complete cross-docking tool for exploring protein-protein interactions. It can automatically perform complete cross-docking of M vs. N proteins.

The dataset used in the paper for protein folding, which is a type of bioinformatics problem.

The dataset used in the paper is a collection of non-productive sequences of T cell receptor (TCR) genes, including alpha and beta chains.

CRFs have been applied to a variety of domains, including text processing, computer vision, and bioinformatics.

The dataset contains 12390 marker gene database with different dimension (k-bp).

The dataset contains 12390 marker gene database with different dimension (k-bp).

The dataset contains 12390 marker gene database with different dimension (k-bp).

The dataset contains 12390 marker gene database with different dimension (k-bp).

Microbial clades modeling is a challenging problem in biology based on microarray genome sequences, especially in new species gene isolates discovery and category. Marker family...

The Diabetes and Asia datasets were used for the experiments.