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Endoscopy Images
Endoscopy images dataset was from the MICCAI 2017 EndoVis Challenge [1] that focused on segmenting seven instruments from endoscopy images. -
Abdomen MRI
Abdomen MRI dataset was from the MICCAI 2022 AMOS Challenge [25] that also focused on abdominal organ segmentation. -
Abdomen CT
Abdomen CT dataset was from the MICCAI 2022 FLARE Challenge [35] that focused on the segmentation of 13 abdominal organs, including the liver, spleen, pancreas, right kidney,... -
Medical Image Segmentation dataset
The dataset contains images of medical images and corresponding labels. -
Multi-Atlas Labeling Beyond the Cranial Vault (BTCV)
The BTCV dataset contains abdominal CT images for segmentation tasks. -
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical I...
Automatic segmentation of medical images is a key step for diagnostic and interventional tasks. However, achieving this requires large amounts of annotated volumes, which can be... -
Abdominal Multi Organ Segmentation 2022 (AMOS2022) challenge dataset
The Abdominal Multi Organ Segmentation 2022 (AMOS2022) challenge dataset contains 500 CT and 100 MRI scans collected from multiple sites, a wide range of imaging conditions, and... -
Atrial Segmentation Challenge dataset
Semantic object segmentation is a fundamental task in medical image analysis and has been widely used in automatic delineation of regions of interest in 3D medical images, such... -
ISBI 2013 Challenge
The ISBI 2013 challenge dataset is a collection of medical images with corresponding segmentations. -
Med-NCA: Robust and Lightweight Segmentation with Neural Cellular Automata
Medical image segmentation with Deep Learning. This requirement makes it difficult to run state-of-the-art segmentation models in resource-constrained scenarios like primary... -
Amos: A large-scale abdominal multi-organ benchmark for versatile medical ima...
A large-scale abdominal multi-organ benchmark for versatile medical image segmentation -
Prostate MR and Abdominal CT
Two large multiclass data sets for prostate MR and abdominal CT -
Multi-view multi-stage and multi-window framework for pulmonary artery segmen...
A multi-view multi-stage and multi-window framework for pulmonary artery segmentation from CT scans -
Prostate, cardiac cine-MRI, inner ear, and long-axis echocardiographic image ...
The dataset used for prostate segmentation in radiotherapy, cardiac cine-MRI segmentation, inner ear segmentation, and long-axis echocardiographic image segmentation. -
MICCAI 2019 StructSeg challenge dataset
The MICCAI 2019 StructSeg challenge dataset for GTV segmentation of nasopharynx cancer from CT images. -
TotalSegmentator-V2
The TotalSegmentator-V2 dataset is a publicly available dataset for 3D medical image segmentation. It contains 1,228 CT scans with annotations for 117 major anatomical... -
PromptNucSeg
A novel prompt-driven framework for automatic nucleus instance segmentation in histology images. -
MaskSAM: Towards Auto-prompt SAM with Mask Classification for Medical Image S...
Segment Anything Model (SAM) is a prompt-driven foundation model for natural image segmentation, which is trained on the large-scale SA-1B dataset of 1B masks and 11M images.