23 datasets found

Physicochemical Properties of Protein Tertiary Structure Data Set. UCI Machine Learning Repository, https://doi.org/10.24432/C5QW3H.

PDBj is a database of protein structures. It provides access to protein structures and tools for analysis.

The dataset used in this study is a collection of protein structure data from the Protein Data Bank (PDB), which is used to infer the interactions between protein subunits.

The CASP14 and CASP15 datasets, which contain protein structures and their corresponding coordinates.

The Protein Data Bank (PDB) dataset is a collection of protein structures, used for molecular docking and drug discovery.

All-atom molecular dynamics simulations of the projection domain of the intrinsically disordered htau40 protein

The dataset used in this study is the protein-protein docking data of soluble ACE2 with the spike (S1) membrane protein of SARS-CoV-2

Hydrophobicity profiles of Coronavirus spike proteins

The experimental dataset is the precatalytic spliceosome dataset from the EMPIAR database.

The 1D-motion dataset consists of 10 distinct conformations of a protein fragment.

The 80S-bimodal dataset consists of two ground-truth volumes: the rotated and un-rotated states of the 80S ribosome protein.

The dataset used for training and testing the SE(3) diffusion model.

The Protein Data Bank contains 13,308 complexes of ligands bound to target proteins with structures determined by X-ray crystallography.

Structural Classification of Proteins — extended (SCOPe) dataset

This dataset contains protein structures and their corresponding features.

The RAbD dataset is a benchmark for antibody design, which is used to evaluate the performance of the proposed dyMEAN model.

The Structural Antibody Database (SAbDab) is a dataset of antibody structures, which is used for training and testing the proposed dyMEAN model.

The OmegaFold dataset is used for protein structure prediction.

The ProteinMPNN dataset is used for inverse folding and protein structure prediction.

The CATH dataset provides a de-duplicated set of protein structural folds spanning a wide range of functions.