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{
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{
            
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  "author": "Nakamura, T",
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  "author": "Nakamura, T",
            
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  "author_email": "",
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  "author_email": "",
            
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  "citation": [],
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  "citation": [],
            
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
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  "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            
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  "doi": "10.1594/PANGAEA.721856",
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  "doi": "10.1594/PANGAEA.721856",
            
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  "doi_date_published": "2009",
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  "doi_date_published": "2009",
            
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  "doi_publisher": "",
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  "doi_publisher": "",
            
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  "doi_status": "True",
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  "doi_status": "True",
            
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  "extra_authors": [
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  "extra_authors": [
            
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    {
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    {
            
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      "extra_author": "Nakamori, T",
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      "extra_author": "Nakamori, T",
            
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      "familyName": "Nakamori",
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      "familyName": "Nakamori",
            
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      "givenName": "T",
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      "givenName": "T",
            
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      "orcid": ""
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      "orcid": ""
            
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    }
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    }
            
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  ],
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  ],
            
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  "familyName": "Nakamura",
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  "familyName": "Nakamura",
            
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  "givenName": "T",
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  "givenName": "T",
            
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  "groups": [],
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  "groups": [],
            
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  "id": "7734309d-bd14-4c16-bb58-64f6b02bf0a9",
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  "id": "7734309d-bd14-4c16-bb58-64f6b02bf0a9",
            
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  "isopen": false,
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  "isopen": false,
            
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  "license_id": "CC-BY-3.0",
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  "license_id": "CC-BY-3.0",
            
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  "license_title": "CC-BY-3.0",
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  "license_title": "CC-BY-3.0",
            
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  "metadata_created": "2024-11-29T11:34:06.273650",
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  "metadata_created": "2024-11-29T11:34:06.273650",
            
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  "metadata_modified": "2024-11-29T11:34:06.273656",
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  "metadata_modified": "2024-11-30T11:48:54.562645",
            
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  "name": "png-doi-10-1594-pangaea-721856",
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  "name": "png-doi-10-1594-pangaea-721856",
            
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  "notes": "Seven coral reef communities were defined on Shiraho 
28
  "notes": "Seven coral reef communities were defined on Shiraho 
            
29
fringing reef, Ishigaki Island, Japan. Net photosynthesis and 
29
fringing reef, Ishigaki Island, Japan. Net photosynthesis and 
            
30
calcification rates were measured by in situ incubations at 10 sites 
30
calcification rates were measured by in situ incubations at 10 sites 
            
31
that included six of the defined communities, and which occupied most 
31
that included six of the defined communities, and which occupied most 
            
32
of the area on the reef flat and slope. Net photosynthesis on the reef 
32
of the area on the reef flat and slope. Net photosynthesis on the reef 
            
33
flat was positive overall, but the reef flat acts as a source for 
33
flat was positive overall, but the reef flat acts as a source for 
            
34
atmospheric CO2, because the measured calcification/photosynthesis 
34
atmospheric CO2, because the measured calcification/photosynthesis 
            
35
ratio of 2.5 is greater than the critical ratio of 1.67. Net 
35
ratio of 2.5 is greater than the critical ratio of 1.67. Net 
            
36
photosynthesis on the reef slope was negative. Almost all excess 
36
photosynthesis on the reef slope was negative. Almost all excess 
            
37
organic production from the reef flat is expected to be effused to the 
37
organic production from the reef flat is expected to be effused to the 
            
38
outer reef and consumed by the communities there. Therefore, the total 
38
outer reef and consumed by the communities there. Therefore, the total 
            
39
net organic production of the whole reef system is probably almost 
39
net organic production of the whole reef system is probably almost 
            
40
zero and the whole reef system also acts as a source for atmospheric 
40
zero and the whole reef system also acts as a source for atmospheric 
            
41
CO2. Net calcification rates of the reef slope corals were much lower 
41
CO2. Net calcification rates of the reef slope corals were much lower 
            
42
than those of the branching corals. The accumulation rate of the 
42
than those of the branching corals. The accumulation rate of the 
            
43
former was approximately 0.5 m kyr?1 and of the latter was ~0.7-5 m 
43
former was approximately 0.5 m kyr?1 and of the latter was ~0.7-5 m 
            
44
kyr?1. Consequently, reef slope corals could not grow fast enough to 
44
kyr?1. Consequently, reef slope corals could not grow fast enough to 
            
45
keep up with or catch up to rising sea levels during the Holocene. On 
45
keep up with or catch up to rising sea levels during the Holocene. On 
            
46
the other hand, the branching corals grow fast enough to keep up with 
46
the other hand, the branching corals grow fast enough to keep up with 
            
47
this rising sea level. Therefore, a transition between early Holocene 
47
this rising sea level. Therefore, a transition between early Holocene 
            
48
and present-day reef communities is expected. Branching coral 
48
and present-day reef communities is expected. Branching coral 
            
49
communities would have dominated while reef growth kept pace with sea 
49
communities would have dominated while reef growth kept pace with sea 
            
50
level rise, and the reef was constructed with a branching coral 
50
level rise, and the reef was constructed with a branching coral 
            
51
framework. Then, the outside of this framework was covered and built 
51
framework. Then, the outside of this framework was covered and built 
            
52
up by reef slope corals and present-day reefs were constructed.",
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up by reef slope corals and present-day reefs were constructed.",
            
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  "orcid": "0000-0002-2434-4532",
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  "orcid": "0000-0002-2434-4532",
            
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  "organization": {
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  "organization": {
            
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    "approval_status": "approved",
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    "approval_status": "approved",
            
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    "created": "2024-11-29T11:32:00.143130",
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    "created": "2024-11-30T11:33:58.986659",
            
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    "description": "PANGAEA (Data Publisher for Earth & Environmental 
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    "description": "PANGAEA (Data Publisher for Earth & Environmental 
            
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Science): The information system PANGAEA is operated as an Open Access 
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Science): The information system PANGAEA is operated as an Open Access 
            
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library aimed at archiving, publishing and distributing georeferenced 
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library aimed at archiving, publishing and distributing georeferenced 
            
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data from earth system research. PANGAEA guarantees long-term 
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data from earth system research. PANGAEA guarantees long-term 
            
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availability (greater than 10 years) of its content. PANGAEA is open 
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availability (greater than 10 years) of its content. PANGAEA is open 
            
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to any project, institution, or individual scientist to use or to 
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to any project, institution, or individual scientist to use or to 
            
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archive and publish data. PANGAEA focuses on georeferenced 
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archive and publish data. PANGAEA focuses on georeferenced 
            
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observational data, experimental data, and models/simulations. 
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observational data, experimental data, and models/simulations. 
            
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Citability, comprehensive metadata descriptions, interoperability of 
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Citability, comprehensive metadata descriptions, interoperability of 
            
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data and metadata, a high degree of structural and semantic 
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data and metadata, a high degree of structural and semantic 
            
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harmonization of the data inventory as well as the commitment of the 
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harmonization of the data inventory as well as the commitment of the 
            
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hosting institutions ensures FAIRness of archived data.",
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hosting institutions ensures FAIRness of archived data.",
            
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    "id": "3226ef9c-20d1-43fd-ba8f-fa35c8c9fb5d",
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    "id": "ce65c98e-83d7-4b4f-9db3-99759a987d6c",
            
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    "image_url": "pangaea_topicbiosphere.png",
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    "image_url": "pangaea_topicoceans.png",
            
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    "is_organization": true,
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    "is_organization": true,
            
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    "name": "pangaea_biosphere",
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    "name": "pangaea_oceans",
            
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    "state": "active",
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    "state": "active",
            
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    "title": "PANGAEA (Biosphere)",
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    "title": "PANGAEA (Oceans)",
            
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    "type": "organization"
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    "type": "organization"
            
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  },
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  },
            
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  "owner_org": "3226ef9c-20d1-43fd-ba8f-fa35c8c9fb5d",
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  "owner_org": "ce65c98e-83d7-4b4f-9db3-99759a987d6c",
            
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  "private": false,
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  "private": false,
            
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  "publication_year": "2009",
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  "publication_year": "2009",
            
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  "related_identifiers": [
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  "related_identifiers": [
            
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    {
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    {
            
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      "authors": "Nakamura T,Nakamori T",
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      "authors": "Nakamura T,Nakamori T",
            
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      "email_authors": ",",
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      "email_authors": ",",
            
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      "identifier": "https://doi.org/10.1007/s00338-008-0454-8",
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      "identifier": "https://doi.org/10.1007/s00338-008-0454-8",
            
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      "identifier_type": "DOI",
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      "identifier_type": "DOI",
            
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      "orcid_authors": "0000-0002-2434-4532,",
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      "orcid_authors": "0000-0002-2434-4532,",
            
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      "relation_type": "IsSupplementTo",
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      "relation_type": "IsSupplementTo",
            
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      "source": "Coral Reefs",
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      "source": "Coral Reefs",
            
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      "title": "Estimation of photosynthesis and calcification rates 
91
      "title": "Estimation of photosynthesis and calcification rates 
            
92
at a fringing reef by accounting for diurnal variations and the 
92
at a fringing reef by accounting for diurnal variations and the 
            
93
zonation of coral reef communities on reef flat and slope: a case 
93
zonation of coral reef communities on reef flat and slope: a case 
            
94
study for the Shiraho reef, Ishigaki Island, southwest Japan",
94
study for the Shiraho reef, Ishigaki Island, southwest Japan",
            
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      "year": "2009"
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      "year": "2009"
            
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    }
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    }
            
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  ],
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  ],
            
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  "relationships_as_object": [],
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  "relationships_as_object": [],
            
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  "relationships_as_subject": [],
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  "relationships_as_subject": [],
            
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  "repository_name": "PANGAEA (Data Publisher for Earth & 
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  "repository_name": "PANGAEA (Data Publisher for Earth & 
            
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Environmental Science)",
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Environmental Science)",
            
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  "resource_type": "text/tab-separated-values - filename: 
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  "resource_type": "text/tab-separated-values - filename: 
            
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C_chem_computation_Nakamura_and_Nakamori_2008",
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C_chem_computation_Nakamura_and_Nakamori_2008",
            
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  "resources": [],
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  "resources": [],
            
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  "source_metadata_created": "2009",
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  "source_metadata_created": "2009",
            
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  "source_metadata_modified": "",
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  "source_metadata_modified": "",
            
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  "state": "active",
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  "state": "active",
            
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  "subject_areas": [
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  "subject_areas": [
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Biosphere"
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      "subject_area_name": "Biosphere"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Chemistry"
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      "subject_area_name": "Chemistry"
            
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    },
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    },
            
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    {
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    {
            
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      "subject_area_additional": "",
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      "subject_area_additional": "",
            
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      "subject_area_name": "Oceans"
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      "subject_area_name": "Oceans"
            
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    }
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    }
            
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  ],
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  ],
            
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  "tags": [
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  "tags": [
            
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    {
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    {
            
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      "display_name": "1000 L or  1 m2",
            
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      "id": "d920ecdb-c44e-43f2-bb4c-ffdc3a3c398c",
            
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      "name": "1000 L or  1 m2",
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
            
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    {
            
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      "display_name": "Benthos",
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      "display_name": "Benthos",
            
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      "id": "55bc70f2-ff73-4d9a-89f6-16358d0d9b87",
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      "id": "55bc70f2-ff73-4d9a-89f6-16358d0d9b87",
            
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      "name": "Benthos",
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      "name": "Benthos",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Calcification-Dissolution",
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      "display_name": "Calcification",
            
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      "id": "90f00008-2fad-42d6-b697-f331b63dca60",
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      "id": "7e8ea514-3848-498c-b07f-22d71e1b83e3",
            
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      "name": "Calcification-Dissolution",
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      "name": "Calcification",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Coast and continental shelf",
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      "display_name": "Coast and continental shelf",
            
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      "id": "58eb1929-34b5-4fd9-ac44-824f0e51de40",
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      "id": "58eb1929-34b5-4fd9-ac44-824f0e51de40",
            
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      "name": "Coast and continental shelf",
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      "name": "Coast and continental shelf",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Containers and aquaria 20-1000 L or  1 m2",
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      "display_name": "Containers and aquaria 20",
            
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      "id": "a9d9036d-3fe8-4fb1-bcb9-07b8a3a3fe11",
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      "id": "18d57eca-7aec-4d8a-9a57-92bf32a45d53",
            
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      "name": "Containers and aquaria 20-1000 L or  1 m2",
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      "name": "Containers and aquaria 20",
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
            
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    {
            
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      "display_name": "Dissolution",
            
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      "id": "ccf682ce-0609-42e9-87cd-0873f6fce3f5",
            
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      "name": "Dissolution",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Entire community",
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      "display_name": "Entire community",
            
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      "id": "6e1a8708-bc7c-4fa2-af8d-8a3c7bf9112a",
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      "id": "6e1a8708-bc7c-4fa2-af8d-8a3c7bf9112a",
            
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      "name": "Entire community",
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      "name": "Entire community",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Field experiment",
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      "display_name": "Field experiment",
            
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      "id": "f5b46eb4-b614-44d7-a35b-a06d10c6d70d",
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      "id": "f5b46eb4-b614-44d7-a35b-a06d10c6d70d",
            
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      "name": "Field experiment",
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      "name": "Field experiment",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "North Pacific",
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      "display_name": "North Pacific",
            
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      "id": "efbdbaff-aa72-4a57-8e03-e9f84253d644",
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      "id": "efbdbaff-aa72-4a57-8e03-e9f84253d644",
            
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      "name": "North Pacific",
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      "name": "North Pacific",
            
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      "state": "active",
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      "state": "active",
            
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      "vocabulary_id": null
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      "vocabulary_id": null
            
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    },
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    },
            
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    {
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    {
            
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      "display_name": "Photosynthesis",
            
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      "id": "ab256517-eb7b-4eed-ad52-64a0ee98fe87",
            
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      "name": "Photosynthesis",
            
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      "state": "active",
            
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      "vocabulary_id": null
            
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    },
            
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    {
            
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      "display_name": "Primary production-Photosynthesis",
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      "display_name": "Primary production",
            
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      "id": "446160f8-ac15-4da8-a39f-79b6c421e396",
195
      "id": "aca6914d-a728-406d-a5b9-dd9593c21e4e",
            
175
      "name": "Primary production-Photosynthesis",
196
      "name": "Primary production",
            
176
      "state": "active",
197
      "state": "active",
            
177
      "vocabulary_id": null
198
      "vocabulary_id": null
            
178
    },
199
    },
            
179
    {
200
    {
            
n
180
      "display_name": "Rocky-shore community",
n
201
      "display_name": "Rocky",
            
181
      "id": "27fcae61-2305-4f94-9dc6-faf0125e6cb8",
202
      "id": "cadb422a-930f-480b-8eb0-8433d79ed245",
            
182
      "name": "Rocky-shore community",
203
      "name": "Rocky",
            
183
      "state": "active",
204
      "state": "active",
            
184
      "vocabulary_id": null
205
      "vocabulary_id": null
            
185
    },
206
    },
            
186
    {
207
    {
            
187
      "display_name": "Temperate",
208
      "display_name": "Temperate",
            
188
      "id": "31aaeb0c-a4a5-4a8e-9c90-be1eff0cac91",
209
      "id": "31aaeb0c-a4a5-4a8e-9c90-be1eff0cac91",
            
189
      "name": "Temperate",
210
      "name": "Temperate",
            
t
t
211
      "state": "active",
            
212
      "vocabulary_id": null
            
213
    },
            
214
    {
            
215
      "display_name": "shore community",
            
216
      "id": "a8d40e90-8700-46da-96ee-1ff06b066023",
            
217
      "name": "shore community",
            
190
      "state": "active",
218
      "state": "active",
            
191
      "vocabulary_id": null
219
      "vocabulary_id": null
            
192
    }
220
    }
            
193
  ],
221
  ],
            
194
  "title": "Seawater carbonate chemistry, community calcification and 
222
  "title": "Seawater carbonate chemistry, community calcification and 
            
195
photosynthesis during experiments with coral reefs at Shiraho reef, 
223
photosynthesis during experiments with coral reefs at Shiraho reef, 
            
196
Ishigaki Island, southwest Japan, 2009",
224
Ishigaki Island, southwest Japan, 2009",
            
197
  "type": "vdataset",
225
  "type": "vdataset",
            
198
  "url": "https://doi.org/10.1594/PANGAEA.721856"
226
  "url": "https://doi.org/10.1594/PANGAEA.721856"
            
199
}
227
}