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f | 1 | { | f | 1 | { |
2 | "author": "Sawade, Kevin", | 2 | "author": "Sawade, Kevin", | ||
3 | "author_email": "", | 3 | "author_email": "", | ||
4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | 4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | ||
5 | "doi": "10.48606/99", | 5 | "doi": "10.48606/99", | ||
6 | "doi_date_published": "2023", | 6 | "doi_date_published": "2023", | ||
7 | "doi_publisher": "", | 7 | "doi_publisher": "", | ||
8 | "doi_status": "True", | 8 | "doi_status": "True", | ||
9 | "extra_authors": [ | 9 | "extra_authors": [ | ||
10 | { | 10 | { | ||
11 | "extra_author": "Marx, Andreas", | 11 | "extra_author": "Marx, Andreas", | ||
12 | "orcid": "0000-0002-6471-3689" | 12 | "orcid": "0000-0002-6471-3689" | ||
13 | }, | 13 | }, | ||
14 | { | 14 | { | ||
15 | "extra_author": "Peter, Christine", | 15 | "extra_author": "Peter, Christine", | ||
16 | "orcid": "0000-0002-1471-5440" | 16 | "orcid": "0000-0002-1471-5440" | ||
17 | }, | 17 | }, | ||
18 | { | 18 | { | ||
19 | "extra_author": "Kukharenko, Oleksandra", | 19 | "extra_author": "Kukharenko, Oleksandra", | ||
20 | "orcid": "0000-0002-3285-1403" | 20 | "orcid": "0000-0002-3285-1403" | ||
21 | } | 21 | } | ||
22 | ], | 22 | ], | ||
23 | "groups": [], | 23 | "groups": [], | ||
24 | "id": "12606b04-096a-4398-81c0-c4d0e92dae12", | 24 | "id": "12606b04-096a-4398-81c0-c4d0e92dae12", | ||
25 | "isopen": false, | 25 | "isopen": false, | ||
26 | "license_id": "GNU Lesser General Public License v3.0 only", | 26 | "license_id": "GNU Lesser General Public License v3.0 only", | ||
27 | "license_title": "GNU Lesser General Public License v3.0 only", | 27 | "license_title": "GNU Lesser General Public License v3.0 only", | ||
28 | "metadata_created": "2023-08-04T08:51:06.407592", | 28 | "metadata_created": "2023-08-04T08:51:06.407592", | ||
t | 29 | "metadata_modified": "2023-08-04T08:53:46.088831", | t | 29 | "metadata_modified": "2023-08-04T09:04:27.761673", |
30 | "name": "rdr-doi-10-48606-99", | 30 | "name": "rdr-doi-10-48606-99", | ||
31 | "notes": "Abstract: The dataset comprises atomistic molecular | 31 | "notes": "Abstract: The dataset comprises atomistic molecular | ||
32 | dynamics simulations of ubiquitylated linker histone H1. The provided | 32 | dynamics simulations of ubiquitylated linker histone H1. The provided | ||
33 | data has been stripped from solvent and subsampled with a 50 ps | 33 | data has been stripped from solvent and subsampled with a 50 ps | ||
34 | timestep. The six ubiquitylation sites K30, K41, K47, K51, K56, and | 34 | timestep. The six ubiquitylation sites K30, K41, K47, K51, K56, and | ||
35 | K63 can be found in their respective folders. The starting structures | 35 | K63 can be found in their respective folders. The starting structures | ||
36 | were created by rotating the chi3 angle of the ubiquitylated lysine. | 36 | were created by rotating the chi3 angle of the ubiquitylated lysine. | ||
37 | The simulation data encompasses the simulations from these starting | 37 | The simulation data encompasses the simulations from these starting | ||
38 | structures plus so-called expansion simulations started from these | 38 | structures plus so-called expansion simulations started from these | ||
39 | initial simulations. Find more info in the provided README.", | 39 | initial simulations. Find more info in the provided README.", | ||
40 | "num_resources": 0, | 40 | "num_resources": 0, | ||
41 | "num_tags": 7, | 41 | "num_tags": 7, | ||
42 | "orcid": "0000-0002-7735-1488", | 42 | "orcid": "0000-0002-7735-1488", | ||
43 | "organization": { | 43 | "organization": { | ||
44 | "approval_status": "approved", | 44 | "approval_status": "approved", | ||
45 | "created": "2023-01-12T13:30:23.238233", | 45 | "created": "2023-01-12T13:30:23.238233", | ||
46 | "description": "RADAR (Research Data Repository) is a | 46 | "description": "RADAR (Research Data Repository) is a | ||
47 | cross-disciplinary repository for archiving and publishing research | 47 | cross-disciplinary repository for archiving and publishing research | ||
48 | data from completed scientific studies and projects. The focus is on | 48 | data from completed scientific studies and projects. The focus is on | ||
49 | research data from subjects that do not yet have their own | 49 | research data from subjects that do not yet have their own | ||
50 | discipline-specific infrastructures for research data management. ", | 50 | discipline-specific infrastructures for research data management. ", | ||
51 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 51 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
52 | "image_url": "radar-logo.svg", | 52 | "image_url": "radar-logo.svg", | ||
53 | "is_organization": true, | 53 | "is_organization": true, | ||
54 | "name": "radar", | 54 | "name": "radar", | ||
55 | "state": "active", | 55 | "state": "active", | ||
56 | "title": "RADAR", | 56 | "title": "RADAR", | ||
57 | "type": "organization" | 57 | "type": "organization" | ||
58 | }, | 58 | }, | ||
59 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 59 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
60 | "private": false, | 60 | "private": false, | ||
61 | "production_year": "2020-2023", | 61 | "production_year": "2020-2023", | ||
62 | "publication_year": "2023", | 62 | "publication_year": "2023", | ||
63 | "publishers": [ | 63 | "publishers": [ | ||
64 | { | 64 | { | ||
65 | "publisher": "Universit\u00e4t Konstanz" | 65 | "publisher": "Universit\u00e4t Konstanz" | ||
66 | } | 66 | } | ||
67 | ], | 67 | ], | ||
68 | "relationships_as_object": [], | 68 | "relationships_as_object": [], | ||
69 | "relationships_as_subject": [], | 69 | "relationships_as_subject": [], | ||
70 | "repository_name": "RADAR (Research Data Repository)", | 70 | "repository_name": "RADAR (Research Data Repository)", | ||
71 | "resources": [], | 71 | "resources": [], | ||
72 | "services_used_list": "", | 72 | "services_used_list": "", | ||
73 | "source_metadata_created": "2023", | 73 | "source_metadata_created": "2023", | ||
74 | "source_metadata_modified": "", | 74 | "source_metadata_modified": "", | ||
75 | "state": "active", | 75 | "state": "active", | ||
76 | "subject_areas": [ | 76 | "subject_areas": [ | ||
77 | { | 77 | { | ||
78 | "subject_area_additional": "", | 78 | "subject_area_additional": "", | ||
79 | "subject_area_name": "Chemistry" | 79 | "subject_area_name": "Chemistry" | ||
80 | } | 80 | } | ||
81 | ], | 81 | ], | ||
82 | "tags": [ | 82 | "tags": [ | ||
83 | { | 83 | { | ||
84 | "display_name": "Chromatin", | 84 | "display_name": "Chromatin", | ||
85 | "id": "6bb61b75-79f6-42cf-91c6-47dc07a19c78", | 85 | "id": "6bb61b75-79f6-42cf-91c6-47dc07a19c78", | ||
86 | "name": "Chromatin", | 86 | "name": "Chromatin", | ||
87 | "state": "active", | 87 | "state": "active", | ||
88 | "vocabulary_id": null | 88 | "vocabulary_id": null | ||
89 | }, | 89 | }, | ||
90 | { | 90 | { | ||
91 | "display_name": "Chromatosome", | 91 | "display_name": "Chromatosome", | ||
92 | "id": "8d51e54e-f465-4e58-892e-816ca4e307de", | 92 | "id": "8d51e54e-f465-4e58-892e-816ca4e307de", | ||
93 | "name": "Chromatosome", | 93 | "name": "Chromatosome", | ||
94 | "state": "active", | 94 | "state": "active", | ||
95 | "vocabulary_id": null | 95 | "vocabulary_id": null | ||
96 | }, | 96 | }, | ||
97 | { | 97 | { | ||
98 | "display_name": "Gromacs", | 98 | "display_name": "Gromacs", | ||
99 | "id": "3a4565a7-228f-4226-aef7-d88eb3d920d2", | 99 | "id": "3a4565a7-228f-4226-aef7-d88eb3d920d2", | ||
100 | "name": "Gromacs", | 100 | "name": "Gromacs", | ||
101 | "state": "active", | 101 | "state": "active", | ||
102 | "vocabulary_id": null | 102 | "vocabulary_id": null | ||
103 | }, | 103 | }, | ||
104 | { | 104 | { | ||
105 | "display_name": "Linker histone", | 105 | "display_name": "Linker histone", | ||
106 | "id": "393e35fc-edec-4b3b-90ec-72804f0943bc", | 106 | "id": "393e35fc-edec-4b3b-90ec-72804f0943bc", | ||
107 | "name": "Linker histone", | 107 | "name": "Linker histone", | ||
108 | "state": "active", | 108 | "state": "active", | ||
109 | "vocabulary_id": null | 109 | "vocabulary_id": null | ||
110 | }, | 110 | }, | ||
111 | { | 111 | { | ||
112 | "display_name": "Molecular Dynamics", | 112 | "display_name": "Molecular Dynamics", | ||
113 | "id": "3e042b83-591c-4e1f-9be8-10a601f890e2", | 113 | "id": "3e042b83-591c-4e1f-9be8-10a601f890e2", | ||
114 | "name": "Molecular Dynamics", | 114 | "name": "Molecular Dynamics", | ||
115 | "state": "active", | 115 | "state": "active", | ||
116 | "vocabulary_id": null | 116 | "vocabulary_id": null | ||
117 | }, | 117 | }, | ||
118 | { | 118 | { | ||
119 | "display_name": "Nucleosome", | 119 | "display_name": "Nucleosome", | ||
120 | "id": "32d95722-ff5c-4dda-b6e5-16f537363b62", | 120 | "id": "32d95722-ff5c-4dda-b6e5-16f537363b62", | ||
121 | "name": "Nucleosome", | 121 | "name": "Nucleosome", | ||
122 | "state": "active", | 122 | "state": "active", | ||
123 | "vocabulary_id": null | 123 | "vocabulary_id": null | ||
124 | }, | 124 | }, | ||
125 | { | 125 | { | ||
126 | "display_name": "Ubiquitin", | 126 | "display_name": "Ubiquitin", | ||
127 | "id": "25fbeda1-a1f7-4a2e-994b-89fa257738bd", | 127 | "id": "25fbeda1-a1f7-4a2e-994b-89fa257738bd", | ||
128 | "name": "Ubiquitin", | 128 | "name": "Ubiquitin", | ||
129 | "state": "active", | 129 | "state": "active", | ||
130 | "vocabulary_id": null | 130 | "vocabulary_id": null | ||
131 | } | 131 | } | ||
132 | ], | 132 | ], | ||
133 | "title": "Dataset: combining molecular dynamics simulations and | 133 | "title": "Dataset: combining molecular dynamics simulations and | ||
134 | scoring method to computationally model ubiquitylated linker histones | 134 | scoring method to computationally model ubiquitylated linker histones | ||
135 | in chromatosomes", | 135 | in chromatosomes", | ||
136 | "type": "vdataset", | 136 | "type": "vdataset", | ||
137 | "url": "https://doi.org/10.48606/99" | 137 | "url": "https://doi.org/10.48606/99" | ||
138 | } | 138 | } |