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f | 1 | { | f | 1 | { |
2 | "author": "Milde, Raika", | 2 | "author": "Milde, Raika", | ||
3 | "author_email": "", | 3 | "author_email": "", | ||
4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | 4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | ||
5 | "doi": "10.22000/799", | 5 | "doi": "10.22000/799", | ||
6 | "doi_date_published": "2022", | 6 | "doi_date_published": "2022", | ||
7 | "doi_publisher": "", | 7 | "doi_publisher": "", | ||
8 | "doi_status": "True", | 8 | "doi_status": "True", | ||
9 | "extra_authors": [ | 9 | "extra_authors": [ | ||
10 | { | 10 | { | ||
11 | "extra_author": "Schnabel, Arianne", | 11 | "extra_author": "Schnabel, Arianne", | ||
12 | "orcid": "0000-0002-2172-2905" | 12 | "orcid": "0000-0002-2172-2905" | ||
13 | }, | 13 | }, | ||
14 | { | 14 | { | ||
15 | "extra_author": "Ditfe, Toni", | 15 | "extra_author": "Ditfe, Toni", | ||
16 | "orcid": "0000-0001-6360-6673" | 16 | "orcid": "0000-0001-6360-6673" | ||
17 | }, | 17 | }, | ||
18 | { | 18 | { | ||
19 | "extra_author": "Hoehenwarter, Wolfgang", | 19 | "extra_author": "Hoehenwarter, Wolfgang", | ||
20 | "orcid": "0000-0002-7669-7524" | 20 | "orcid": "0000-0002-7669-7524" | ||
21 | }, | 21 | }, | ||
22 | { | 22 | { | ||
23 | "extra_author": "Proksch, Carsten", | 23 | "extra_author": "Proksch, Carsten", | ||
24 | "orcid": "0000-0003-4948-8281" | 24 | "orcid": "0000-0003-4948-8281" | ||
25 | }, | 25 | }, | ||
26 | { | 26 | { | ||
27 | "extra_author": "Westermann, Bernhard", | 27 | "extra_author": "Westermann, Bernhard", | ||
28 | "orcid": "0000-0002-6228-5991" | 28 | "orcid": "0000-0002-6228-5991" | ||
29 | }, | 29 | }, | ||
30 | { | 30 | { | ||
31 | "extra_author": "Vogt, Thomas", | 31 | "extra_author": "Vogt, Thomas", | ||
32 | "orcid": "0000-0001-6155-3360" | 32 | "orcid": "0000-0001-6155-3360" | ||
33 | } | 33 | } | ||
34 | ], | 34 | ], | ||
35 | "groups": [], | 35 | "groups": [], | ||
36 | "id": "16693d9f-07e1-4ff1-9ab6-87ca53305e1a", | 36 | "id": "16693d9f-07e1-4ff1-9ab6-87ca53305e1a", | ||
37 | "isopen": false, | 37 | "isopen": false, | ||
38 | "license_id": "CC BY 4.0 Attribution", | 38 | "license_id": "CC BY 4.0 Attribution", | ||
39 | "license_title": "CC BY 4.0 Attribution", | 39 | "license_title": "CC BY 4.0 Attribution", | ||
40 | "metadata_created": "2023-01-12T13:30:54.420773", | 40 | "metadata_created": "2023-01-12T13:30:54.420773", | ||
t | 41 | "metadata_modified": "2023-08-04T08:51:32.610078", | t | 41 | "metadata_modified": "2023-08-04T08:53:01.536555", |
42 | "name": "rdr-doi-10-22000-799", | 42 | "name": "rdr-doi-10-22000-799", | ||
43 | "notes": "Abstract: Capsaicin, produced by diverse Capsicum species | 43 | "notes": "Abstract: Capsaicin, produced by diverse Capsicum species | ||
44 | is among the world\u2019s most popular spices and of considerable | 44 | is among the world\u2019s most popular spices and of considerable | ||
45 | pharmaceutical relevance. Although the capsaicinoid biosynthetic | 45 | pharmaceutical relevance. Although the capsaicinoid biosynthetic | ||
46 | pathway has been investigated for decades, several biosynthetic steps | 46 | pathway has been investigated for decades, several biosynthetic steps | ||
47 | have remained partly hypothetical. Genetic evidence suggested that the | 47 | have remained partly hypothetical. Genetic evidence suggested that the | ||
48 | decisive capsaicin synthase is encoded by the Pun1 locus. Yet, genetic | 48 | decisive capsaicin synthase is encoded by the Pun1 locus. Yet, genetic | ||
49 | evidence of the Pun1 locus was never corroborated by functionally | 49 | evidence of the Pun1 locus was never corroborated by functionally | ||
50 | active capsaicin synthase that presumably catalyzes amide bond | 50 | active capsaicin synthase that presumably catalyzes amide bond | ||
51 | formation between trans 8-methyl-6-nonenoyl-CoA derived from branched | 51 | formation between trans 8-methyl-6-nonenoyl-CoA derived from branched | ||
52 | chain amino acid biosynthesis and vanilloylamine derived from the | 52 | chain amino acid biosynthesis and vanilloylamine derived from the | ||
53 | phenylpropanoid pathway. In this report, we demonstrate enzymatic | 53 | phenylpropanoid pathway. In this report, we demonstrate enzymatic | ||
54 | activity of a recombinant capsaicin synthase encoded by Pun1, | 54 | activity of a recombinant capsaicin synthase encoded by Pun1, | ||
55 | functionally expressed in E. coli, and provide information on | 55 | functionally expressed in E. coli, and provide information on | ||
56 | substrate specificity and catalytic properties. Recombinant capsaicin | 56 | substrate specificity and catalytic properties. Recombinant capsaicin | ||
57 | synthase is specific for selected aliphatic CoA-esters and highly | 57 | synthase is specific for selected aliphatic CoA-esters and highly | ||
58 | specific for vanilloylamine. Partly purified from E. coli, the | 58 | specific for vanilloylamine. Partly purified from E. coli, the | ||
59 | recombinant active enzyme is a monomeric protein of 51 kDa that is | 59 | recombinant active enzyme is a monomeric protein of 51 kDa that is | ||
60 | independent of additional co-factors or associated proteins, as | 60 | independent of additional co-factors or associated proteins, as | ||
61 | previously proposed. These data can now be used to design capsaicin | 61 | previously proposed. These data can now be used to design capsaicin | ||
62 | synthase variants with different properties and alternative substrate | 62 | synthase variants with different properties and alternative substrate | ||
63 | preferences.", | 63 | preferences.", | ||
64 | "num_resources": 0, | 64 | "num_resources": 0, | ||
65 | "num_tags": 8, | 65 | "num_tags": 8, | ||
66 | "orcid": "0000-0003-0630-8105", | 66 | "orcid": "0000-0003-0630-8105", | ||
67 | "organization": { | 67 | "organization": { | ||
68 | "approval_status": "approved", | 68 | "approval_status": "approved", | ||
69 | "created": "2023-01-12T13:30:23.238233", | 69 | "created": "2023-01-12T13:30:23.238233", | ||
70 | "description": "RADAR (Research Data Repository) is a | 70 | "description": "RADAR (Research Data Repository) is a | ||
71 | cross-disciplinary repository for archiving and publishing research | 71 | cross-disciplinary repository for archiving and publishing research | ||
72 | data from completed scientific studies and projects. The focus is on | 72 | data from completed scientific studies and projects. The focus is on | ||
73 | research data from subjects that do not yet have their own | 73 | research data from subjects that do not yet have their own | ||
74 | discipline-specific infrastructures for research data management. ", | 74 | discipline-specific infrastructures for research data management. ", | ||
75 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 75 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
76 | "image_url": "radar-logo.svg", | 76 | "image_url": "radar-logo.svg", | ||
77 | "is_organization": true, | 77 | "is_organization": true, | ||
78 | "name": "radar", | 78 | "name": "radar", | ||
79 | "state": "active", | 79 | "state": "active", | ||
80 | "title": "RADAR", | 80 | "title": "RADAR", | ||
81 | "type": "organization" | 81 | "type": "organization" | ||
82 | }, | 82 | }, | ||
83 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 83 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
84 | "private": false, | 84 | "private": false, | ||
85 | "production_year": "2022", | 85 | "production_year": "2022", | ||
86 | "publication_year": "2022", | 86 | "publication_year": "2022", | ||
87 | "publishers": [ | 87 | "publishers": [ | ||
88 | { | 88 | { | ||
89 | "publisher": "Vogt, Thomas" | 89 | "publisher": "Vogt, Thomas" | ||
90 | } | 90 | } | ||
91 | ], | 91 | ], | ||
92 | "related_identifiers": [ | 92 | "related_identifiers": [ | ||
93 | { | 93 | { | ||
94 | "identifier": "10.3390/molecules27206878", | 94 | "identifier": "10.3390/molecules27206878", | ||
95 | "identifier_type": "DOI", | 95 | "identifier_type": "DOI", | ||
96 | "relation_type": "IsSupplementTo" | 96 | "relation_type": "IsSupplementTo" | ||
97 | }, | 97 | }, | ||
98 | { | 98 | { | ||
99 | "identifier": | 99 | "identifier": | ||
100 | "https://identifiers.org/pubchem.compound:1548943", | 100 | "https://identifiers.org/pubchem.compound:1548943", | ||
101 | "identifier_type": "URL", | 101 | "identifier_type": "URL", | ||
102 | "relation_type": "Documents" | 102 | "relation_type": "Documents" | ||
103 | }, | 103 | }, | ||
104 | { | 104 | { | ||
105 | "identifier": "https://identifiers.org/pubchem.compound:165576", | 105 | "identifier": "https://identifiers.org/pubchem.compound:165576", | ||
106 | "identifier_type": "URL", | 106 | "identifier_type": "URL", | ||
107 | "relation_type": "Documents" | 107 | "relation_type": "Documents" | ||
108 | } | 108 | } | ||
109 | ], | 109 | ], | ||
110 | "relationships_as_object": [], | 110 | "relationships_as_object": [], | ||
111 | "relationships_as_subject": [], | 111 | "relationships_as_subject": [], | ||
112 | "repository_name": "RADAR (Research Data Repository)", | 112 | "repository_name": "RADAR (Research Data Repository)", | ||
113 | "resource_type": "Dataset - chromatogram data (arw files), protein | 113 | "resource_type": "Dataset - chromatogram data (arw files), protein | ||
114 | LC-MS/MS, images (tiff, jpeg), tabular data (csv, xlsx)", | 114 | LC-MS/MS, images (tiff, jpeg), tabular data (csv, xlsx)", | ||
115 | "resources": [], | 115 | "resources": [], | ||
116 | "services_used_list": "", | 116 | "services_used_list": "", | ||
117 | "source_metadata_created": "2022", | 117 | "source_metadata_created": "2022", | ||
118 | "source_metadata_modified": "", | 118 | "source_metadata_modified": "", | ||
119 | "state": "active", | 119 | "state": "active", | ||
120 | "subject_areas": [ | 120 | "subject_areas": [ | ||
121 | { | 121 | { | ||
122 | "subject_area_additional": "", | 122 | "subject_area_additional": "", | ||
123 | "subject_area_name": "Biochemistry" | 123 | "subject_area_name": "Biochemistry" | ||
124 | } | 124 | } | ||
125 | ], | 125 | ], | ||
126 | "tags": [ | 126 | "tags": [ | ||
127 | { | 127 | { | ||
128 | "display_name": "BAHD", | 128 | "display_name": "BAHD", | ||
129 | "id": "8a5f3d7c-afd7-44ed-9792-a3ae0a885b35", | 129 | "id": "8a5f3d7c-afd7-44ed-9792-a3ae0a885b35", | ||
130 | "name": "BAHD", | 130 | "name": "BAHD", | ||
131 | "state": "active", | 131 | "state": "active", | ||
132 | "vocabulary_id": null | 132 | "vocabulary_id": null | ||
133 | }, | 133 | }, | ||
134 | { | 134 | { | ||
135 | "display_name": "Capsaicin", | 135 | "display_name": "Capsaicin", | ||
136 | "id": "bbd5ccfb-a796-4f5f-bc95-6bc2f1fa65c9", | 136 | "id": "bbd5ccfb-a796-4f5f-bc95-6bc2f1fa65c9", | ||
137 | "name": "Capsaicin", | 137 | "name": "Capsaicin", | ||
138 | "state": "active", | 138 | "state": "active", | ||
139 | "vocabulary_id": null | 139 | "vocabulary_id": null | ||
140 | }, | 140 | }, | ||
141 | { | 141 | { | ||
142 | "display_name": "Capsicum", | 142 | "display_name": "Capsicum", | ||
143 | "id": "6d9c4e69-e04b-4638-961b-f60439d47b71", | 143 | "id": "6d9c4e69-e04b-4638-961b-f60439d47b71", | ||
144 | "name": "Capsicum", | 144 | "name": "Capsicum", | ||
145 | "state": "active", | 145 | "state": "active", | ||
146 | "vocabulary_id": null | 146 | "vocabulary_id": null | ||
147 | }, | 147 | }, | ||
148 | { | 148 | { | ||
149 | "display_name": "CoA-ester", | 149 | "display_name": "CoA-ester", | ||
150 | "id": "9a4b1c85-6dff-4e36-9965-0bea1040d0af", | 150 | "id": "9a4b1c85-6dff-4e36-9965-0bea1040d0af", | ||
151 | "name": "CoA-ester", | 151 | "name": "CoA-ester", | ||
152 | "state": "active", | 152 | "state": "active", | ||
153 | "vocabulary_id": null | 153 | "vocabulary_id": null | ||
154 | }, | 154 | }, | ||
155 | { | 155 | { | ||
156 | "display_name": "Pun1", | 156 | "display_name": "Pun1", | ||
157 | "id": "0c0118f4-3109-4e15-8d13-6e7271a87ffb", | 157 | "id": "0c0118f4-3109-4e15-8d13-6e7271a87ffb", | ||
158 | "name": "Pun1", | 158 | "name": "Pun1", | ||
159 | "state": "active", | 159 | "state": "active", | ||
160 | "vocabulary_id": null | 160 | "vocabulary_id": null | ||
161 | }, | 161 | }, | ||
162 | { | 162 | { | ||
163 | "display_name": "acyltransferase", | 163 | "display_name": "acyltransferase", | ||
164 | "id": "228fc1dc-1a69-4d85-aac6-4724f2a4110d", | 164 | "id": "228fc1dc-1a69-4d85-aac6-4724f2a4110d", | ||
165 | "name": "acyltransferase", | 165 | "name": "acyltransferase", | ||
166 | "state": "active", | 166 | "state": "active", | ||
167 | "vocabulary_id": null | 167 | "vocabulary_id": null | ||
168 | }, | 168 | }, | ||
169 | { | 169 | { | ||
170 | "display_name": "enzyme activity", | 170 | "display_name": "enzyme activity", | ||
171 | "id": "5444a8c0-f0d5-4bc0-8e1b-e482795b60bd", | 171 | "id": "5444a8c0-f0d5-4bc0-8e1b-e482795b60bd", | ||
172 | "name": "enzyme activity", | 172 | "name": "enzyme activity", | ||
173 | "state": "active", | 173 | "state": "active", | ||
174 | "vocabulary_id": null | 174 | "vocabulary_id": null | ||
175 | }, | 175 | }, | ||
176 | { | 176 | { | ||
177 | "display_name": "substrate specificity", | 177 | "display_name": "substrate specificity", | ||
178 | "id": "195b59a9-46ce-4489-83a8-aeb4b1680fed", | 178 | "id": "195b59a9-46ce-4489-83a8-aeb4b1680fed", | ||
179 | "name": "substrate specificity", | 179 | "name": "substrate specificity", | ||
180 | "state": "active", | 180 | "state": "active", | ||
181 | "vocabulary_id": null | 181 | "vocabulary_id": null | ||
182 | } | 182 | } | ||
183 | ], | 183 | ], | ||
184 | "title": "supporting information: chemical synthesis of trans | 184 | "title": "supporting information: chemical synthesis of trans | ||
185 | 8-methyl-6-nonenoyl-coa and functional expression unravel capsaicin | 185 | 8-methyl-6-nonenoyl-coa and functional expression unravel capsaicin | ||
186 | synthase activity encoded by the pun1 locus", | 186 | synthase activity encoded by the pun1 locus", | ||
187 | "type": "vdataset", | 187 | "type": "vdataset", | ||
188 | "url": "https://doi.org/10.22000/799" | 188 | "url": "https://doi.org/10.22000/799" | ||
189 | } | 189 | } |