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f | 1 | { | f | 1 | { |
2 | "author": "Thaller, Georg", | 2 | "author": "Thaller, Georg", | ||
3 | "author_email": "", | 3 | "author_email": "", | ||
4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | 4 | "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", | ||
5 | "doi": "10.22000/156", | 5 | "doi": "10.22000/156", | ||
6 | "doi_date_published": "2019", | 6 | "doi_date_published": "2019", | ||
7 | "doi_publisher": "", | 7 | "doi_publisher": "", | ||
8 | "doi_status": "True", | 8 | "doi_status": "True", | ||
9 | "extra_authors": [ | 9 | "extra_authors": [ | ||
10 | { | 10 | { | ||
11 | "extra_author": "Kuehn, Christa", | 11 | "extra_author": "Kuehn, Christa", | ||
12 | "orcid": "0000-0002-0216-424X" | 12 | "orcid": "0000-0002-0216-424X" | ||
13 | }, | 13 | }, | ||
14 | { | 14 | { | ||
15 | "extra_author": "Nolte, Wietje", | 15 | "extra_author": "Nolte, Wietje", | ||
16 | "orcid": "0000-0001-7987-9780" | 16 | "orcid": "0000-0001-7987-9780" | ||
17 | } | 17 | } | ||
18 | ], | 18 | ], | ||
19 | "groups": [], | 19 | "groups": [], | ||
20 | "id": "956f3e67-4d32-4f91-a2bd-44444f7ba231", | 20 | "id": "956f3e67-4d32-4f91-a2bd-44444f7ba231", | ||
21 | "isopen": false, | 21 | "isopen": false, | ||
22 | "license_id": "CC BY 4.0 Attribution", | 22 | "license_id": "CC BY 4.0 Attribution", | ||
23 | "license_title": "CC BY 4.0 Attribution", | 23 | "license_title": "CC BY 4.0 Attribution", | ||
24 | "metadata_created": "2023-01-12T13:30:23.564187", | 24 | "metadata_created": "2023-01-12T13:30:23.564187", | ||
n | 25 | "metadata_modified": "2023-01-12T13:30:23.564195", | n | 25 | "metadata_modified": "2023-08-04T08:49:13.663212", |
26 | "name": "rdr-doi-10-22000-156", | 26 | "name": "rdr-doi-10-22000-156", | ||
27 | "notes": "Abstract: The study of selection signatures helps to find | 27 | "notes": "Abstract: The study of selection signatures helps to find | ||
28 | genomic regions that have been under selective pressure and might host | 28 | genomic regions that have been under selective pressure and might host | ||
29 | genes or variants that modulate important phenotypes. Such knowledge | 29 | genes or variants that modulate important phenotypes. Such knowledge | ||
30 | improves our understanding of how breeding programmes have shaped the | 30 | improves our understanding of how breeding programmes have shaped the | ||
31 | genomes of livestock. In this study, 942 stallions were included from | 31 | genomes of livestock. In this study, 942 stallions were included from | ||
32 | four, exemplarily chosen, German warmblood breeds with divergent | 32 | four, exemplarily chosen, German warmblood breeds with divergent | ||
33 | historical and recent selection focus and different crossbreeding | 33 | historical and recent selection focus and different crossbreeding | ||
34 | policies: Trakehner (N=44), Holsteiner (N=358), Hanoverian (N=319) and | 34 | policies: Trakehner (N=44), Holsteiner (N=358), Hanoverian (N=319) and | ||
35 | Oldenburger (N=221). Blood samples were collected during the health | 35 | Oldenburger (N=221). Blood samples were collected during the health | ||
36 | exams of the stallion preselections before licensing and were | 36 | exams of the stallion preselections before licensing and were | ||
37 | genotyped with the Illumina EquineSNP50 BeadChip. Autosomal markers | 37 | genotyped with the Illumina EquineSNP50 BeadChip. Autosomal markers | ||
38 | were used for a multi-method search for signals of positive selection. | 38 | were used for a multi-method search for signals of positive selection. | ||
39 | Analyses within and across breeds were conducted by using the | 39 | Analyses within and across breeds were conducted by using the | ||
40 | integrated Haplotype Score (iHS), cross-population Extended Haplotype | 40 | integrated Haplotype Score (iHS), cross-population Extended Haplotype | ||
41 | Homozygosity (xpEHH) and Runs of Homozygosity (ROH). Oldenburger and | 41 | Homozygosity (xpEHH) and Runs of Homozygosity (ROH). Oldenburger and | ||
42 | Hanoverian showed very similar iHS signatures, but breed specificities | 42 | Hanoverian showed very similar iHS signatures, but breed specificities | ||
43 | were detected on multiple chromosomes with the xpEHH. ", | 43 | were detected on multiple chromosomes with the xpEHH. ", | ||
44 | "num_resources": 0, | 44 | "num_resources": 0, | ||
45 | "num_tags": 3, | 45 | "num_tags": 3, | ||
46 | "orcid": "0000-0002-6782-2039", | 46 | "orcid": "0000-0002-6782-2039", | ||
47 | "organization": { | 47 | "organization": { | ||
48 | "approval_status": "approved", | 48 | "approval_status": "approved", | ||
49 | "created": "2023-01-12T13:30:23.238233", | 49 | "created": "2023-01-12T13:30:23.238233", | ||
50 | "description": "RADAR (Research Data Repository) is a | 50 | "description": "RADAR (Research Data Repository) is a | ||
51 | cross-disciplinary repository for archiving and publishing research | 51 | cross-disciplinary repository for archiving and publishing research | ||
52 | data from completed scientific studies and projects. The focus is on | 52 | data from completed scientific studies and projects. The focus is on | ||
53 | research data from subjects that do not yet have their own | 53 | research data from subjects that do not yet have their own | ||
54 | discipline-specific infrastructures for research data management. ", | 54 | discipline-specific infrastructures for research data management. ", | ||
55 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 55 | "id": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
56 | "image_url": "radar-logo.svg", | 56 | "image_url": "radar-logo.svg", | ||
57 | "is_organization": true, | 57 | "is_organization": true, | ||
58 | "name": "radar", | 58 | "name": "radar", | ||
59 | "state": "active", | 59 | "state": "active", | ||
60 | "title": "RADAR", | 60 | "title": "RADAR", | ||
61 | "type": "organization" | 61 | "type": "organization" | ||
62 | }, | 62 | }, | ||
63 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | 63 | "owner_org": "013c89a9-383c-4200-8baa-0f78bf1d91f9", | ||
64 | "private": false, | 64 | "private": false, | ||
65 | "production_year": "2016-2018", | 65 | "production_year": "2016-2018", | ||
66 | "publication_year": "2019", | 66 | "publication_year": "2019", | ||
67 | "publishers": [ | 67 | "publishers": [ | ||
68 | { | 68 | { | ||
69 | "publisher": "Leibniz Institute for Farm Animal Biology (FBN), | 69 | "publisher": "Leibniz Institute for Farm Animal Biology (FBN), | ||
70 | Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany" | 70 | Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany" | ||
71 | } | 71 | } | ||
72 | ], | 72 | ], | ||
n | n | 73 | "related_identifiers": [ | ||
74 | { | ||||
75 | "identifier": "10.1371/journal.pone.0215913", | ||||
76 | "identifier_type": "DOI", | ||||
77 | "relation_type": "IsSupplementTo" | ||||
78 | } | ||||
79 | ], | ||||
73 | "relationships_as_object": [], | 80 | "relationships_as_object": [], | ||
74 | "relationships_as_subject": [], | 81 | "relationships_as_subject": [], | ||
75 | "repository_name": "RADAR (Research Data Repository)", | 82 | "repository_name": "RADAR (Research Data Repository)", | ||
76 | "resources": [], | 83 | "resources": [], | ||
t | t | 84 | "services_used_list": "", | ||
77 | "source_metadata_created": "2019", | 85 | "source_metadata_created": "2019", | ||
78 | "source_metadata_modified": "", | 86 | "source_metadata_modified": "", | ||
79 | "state": "active", | 87 | "state": "active", | ||
80 | "subject_areas": [ | 88 | "subject_areas": [ | ||
81 | { | 89 | { | ||
82 | "subject_area_additional": "", | 90 | "subject_area_additional": "", | ||
83 | "subject_area_name": "Agriculture" | 91 | "subject_area_name": "Agriculture" | ||
84 | }, | 92 | }, | ||
85 | { | 93 | { | ||
86 | "subject_area_additional": "Animal Genetics", | 94 | "subject_area_additional": "Animal Genetics", | ||
87 | "subject_area_name": "Other" | 95 | "subject_area_name": "Other" | ||
88 | } | 96 | } | ||
89 | ], | 97 | ], | ||
90 | "tags": [ | 98 | "tags": [ | ||
91 | { | 99 | { | ||
92 | "display_name": "animal population genetics", | 100 | "display_name": "animal population genetics", | ||
93 | "id": "2990c4cc-2bf8-4b04-9dd3-e0ba4b3888f5", | 101 | "id": "2990c4cc-2bf8-4b04-9dd3-e0ba4b3888f5", | ||
94 | "name": "animal population genetics", | 102 | "name": "animal population genetics", | ||
95 | "state": "active", | 103 | "state": "active", | ||
96 | "vocabulary_id": null | 104 | "vocabulary_id": null | ||
97 | }, | 105 | }, | ||
98 | { | 106 | { | ||
99 | "display_name": "horse", | 107 | "display_name": "horse", | ||
100 | "id": "fce06a43-16cd-4d77-af99-bd5f8ae14530", | 108 | "id": "fce06a43-16cd-4d77-af99-bd5f8ae14530", | ||
101 | "name": "horse", | 109 | "name": "horse", | ||
102 | "state": "active", | 110 | "state": "active", | ||
103 | "vocabulary_id": null | 111 | "vocabulary_id": null | ||
104 | }, | 112 | }, | ||
105 | { | 113 | { | ||
106 | "display_name": "selection signatures", | 114 | "display_name": "selection signatures", | ||
107 | "id": "5c0b7052-b4db-4be7-aa54-44ca83d303df", | 115 | "id": "5c0b7052-b4db-4be7-aa54-44ca83d303df", | ||
108 | "name": "selection signatures", | 116 | "name": "selection signatures", | ||
109 | "state": "active", | 117 | "state": "active", | ||
110 | "vocabulary_id": null | 118 | "vocabulary_id": null | ||
111 | } | 119 | } | ||
112 | ], | 120 | ], | ||
113 | "title": "Supplemental data to publication \"selection signatures in | 121 | "title": "Supplemental data to publication \"selection signatures in | ||
114 | four german warmblood horse breeds: tracing breeding history in the | 122 | four german warmblood horse breeds: tracing breeding history in the | ||
115 | modern sport horse\" (plos one)", | 123 | modern sport horse\" (plos one)", | ||
116 | "type": "vdataset", | 124 | "type": "vdataset", | ||
117 | "url": "https://doi.org/10.22000/156" | 125 | "url": "https://doi.org/10.22000/156" | ||
118 | } | 126 | } |