While seawater acidification induced by elevated CO2 is known to impact coccolithophores, the effects in combination with decreased salinity caused by sea ice melting and/or hydrological events have not been documented. Here we show the combined effects of seawater acidification and reduced salinity on growth, photosynthesis and calcification of Emiliania huxleyi grown at 2 CO2 concentrations (low CO2 LC:400 μatm; high CO2 HC:1000 μatm) and 3 levels of salinity (25, 30, and 35 per mil). A decrease of salinity from 35 to 25 per mil increased growth rate, cell size and photosynthetic performance under both LC and HC. Calcification rates were relatively insensitive to salinity though they were higher in the LC-grown compared to the HC-grown cells at 25 per mil salinity, with insignificant differences under 30 and 35 per mil. Since salinity and OA treatments did not show interactive effects on calcification, changes in calcification: photosynthesis ratios are attributed to the elevated photosynthetic rates at lower salinities, with higher ratios of calcification to photosynthesis in the cells grown under 35 per mil compared with those grown at 25 per mil. In contrast, photosynthetic carbon fixation increased almost linearly with decreasing salinity, regardless of the pCO2 treatments. When subjected to short-term exposure to high light, the low-salinity-grown cells showed the highest photochemical effective quantum yield with the highest repair rate, though the HC treatment enhanced the PSII damage rate. Our results suggest that, irrespective of pCO2, at low salinity Emiliania huxleyi up-regulates its photosynthetic performance which, despite a relatively insensitive calcification response, may help it better adapt to future ocean global environmental changes, including ocean acidification, especially in the coastal areas of high latitudes.