Seawater carbonate chemistry and whole community and functional gene changes of bioflms on marine plastic debris

Plastics are accumulating in the world's oceans, while ocean waters are becoming acidified by increased CO2. We compared metagenome of biofilms on tethered plastic bottles in subtidal waters off Japan naturally enriched in CO2, compared to normal ambient CO2 levels. Extending from an earlier amplicon study of bacteria, we used metagenomics to provide direct insights into changes in the full range of functional genes and the entire taxonomic tree of life in the context of the changing plastisphere. We found changes in the taxonomic community composition of all branches of life. This included a large increase in diatom relative abundance across the treatments but a decrease in diatom diversity. Network complexity among families decreased with acidification, showing overall simplification of biofilm integration. With acidification, there was decreased prevalence of genes associated with cell–cell interactions and antibiotic resistance, decreased detoxification genes, and increased stress tolerance genes. There were few nutrient cycling gene changes, suggesting that the role of plastisphere biofilms in nutrient processes within an acidified ocean may not change greatly. Our results suggest that as ocean CO2 increases, the plastisphere will undergo broad-ranging changes in both functional and taxonomic composition, especially the ecologically important diatom group, with possible wider implications for ocean ecology.

Data and Resources

This dataset has no data

Cite this as

Kerfahi, Dorsaf, Harvey, Ben P, Kim, Hyoki, Yang, Ying, Adams, Jonathan M, Hall-Spencer, Jason M (2022). Dataset: Seawater carbonate chemistry and whole community and functional gene changes of bioflms on marine plastic debris. https://doi.org/10.1594/PANGAEA.946567

DOI retrieved: 2022

Additional Info

Field Value
Imported on November 29, 2024
Last update November 29, 2024
License CC-BY-4.0
Source https://doi.org/10.1594/PANGAEA.946567
Author Kerfahi, Dorsaf
Given Name Dorsaf
Family Name Kerfahi
More Authors
Harvey, Ben P
Kim, Hyoki
Yang, Ying
Adams, Jonathan M
Hall-Spencer, Jason M
Source Creation 2022
Publication Year 2022
Resource Type text/tab-separated-values - filename: Kerfahi-etal_2022_ME
Subject Areas
Name: Biosphere

Name: Chemistry

Name: Ecology

Name: Oceans

Related Identifiers
Title: Whole community and functional gene changes of biofilms on marine plastic debris in response to ocean acidification
Identifier: https://doi.org/10.1007/s00248-022-01987-w
Type: DOI
Relation: References
Year: 2022
Source: Microbial Ecology
Authors: Kerfahi Dorsaf , Harvey Ben P , Kim Hyoki , Yang Ying , Adams Jonathan M , Hall-Spencer Jason M , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James .

Title: Raw data of functional genes and taxonomy
Type: DOI
Relation: References
Authors: Kerfahi Dorsaf , Harvey Ben P , Kim Hyoki , Yang Ying , Adams Jonathan M , Hall-Spencer Jason M , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James .

Title: seacarb: seawater carbonate chemistry with R. R package version 3.2.16
Identifier: https://cran.r-project.org/web/packages/seacarb/index.html
Type: DOI
Relation: References
Year: 2021
Authors: Kerfahi Dorsaf , Harvey Ben P , Kim Hyoki , Yang Ying , Adams Jonathan M , Hall-Spencer Jason M , Gattuso Jean-Pierre , Epitalon Jean-Marie , Lavigne Héloïse , Orr James .