Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures

doi:doi:10.1594/PANGAEA.962217

Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures

This dataset comprises gene expression data in the deep pelagic jellyfish Periphylla periphylla exposed to anthropogenic disturbance. Specifically, we tested the effects of ocean warming and sediment plumes from deep-sea mining during ex situ experiments, using Periphylla collected in the Lurefjord and Sognefjord, Norway, in 2021. Gene expression is given in normalised counts for each expressed transcript (for both the temperature and suspended sediment separately). Moreover, this dataset lists all significantly expressed transcripts and their summary statistics (e.g. log2 fold change), as identified with Likelihood Ratio Tests (LRT) in DESeq2 (Love et al. 2014), in addition to transcript annotations performed with Trinotate v3.2.1 searching the Blastx, Blastp, Pfam, UniProt-SwissProt, GO, eggNOG and KEGG databases (Bryant et al. 2017).

Data and Resources

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Cite this as

Stenvers, Vanessa, Hauss, Helena, Schmittmann, Lara, Bayer, Till, Havermans, Charlotte, Hentschel, Ute, Sweetman, Andrew K, Hoving, Henk-Jan T (2023). Dataset: Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures. https://doi.org/10.1594/PANGAEA.962217

DOI retrieved: 2023

Additional Info

Field	Value
Imported on	November 30, 2024
Last update	November 30, 2024
License	CC-BY-4.0
Source	https://doi.org/10.1594/PANGAEA.962217
Author	Stenvers, Vanessa
Given Name	Vanessa
Family Name	Stenvers
More Authors	Hauss, Helena Schmittmann, Lara Bayer, Till Havermans, Charlotte Hentschel, Ute Sweetman, Andrew K Hoving, Henk-Jan T
Source Creation	2023
Publication Year	2023
Resource Type	text/tab-separated-values - filename: Stenvers-etal_2023_Periphylla_Transcriptomics
Subject Areas	Name: BiologicalClassification
Related Identifiers	Title: Experimental mining plumes and ocean warming trigger stress in a deep pelagic jellyfish Identifier: https://doi.org/10.1038/s41467-023-43023-6 Type: DOI Relation: References Year: 2023 Source: Nature Communications Authors: Stenvers Vanessa , Hauss Helena , Bayer Till , Havermans Charlotte , Hentschel Ute , Schmittmann Lara , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Bryant Donald M , Johnson K , DiTommaso Tia , Tickle Timothy , Couger Matthew Brian , Paytin-Dogru Duygu , Lee Tae J , Leigh Nicholas D , Kuo Tzu-Hsing , Davis Francis G , Bateman Joel , Bryant Sevara , Guzikowski Anna R , Love Michael , Huber Wolfgang , Anders Simon . Title: Microbial community composition associated with Periphylla periphylla exposed to sediment plumes and increasing temperatures Identifier: https://doi.org/10.1594/PANGAEA.957395 Type: DOI Relation: References Year: 2023 Authors: Stenvers Vanessa , Hauss Helena , Bayer Till , Havermans Charlotte , Hentschel Ute , Schmittmann Lara , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Bryant Donald M , Johnson K , DiTommaso Tia , Tickle Timothy , Couger Matthew Brian , Paytin-Dogru Duygu , Lee Tae J , Leigh Nicholas D , Kuo Tzu-Hsing , Davis Francis G , Bateman Joel , Bryant Sevara , Guzikowski Anna R , Love Michael , Huber Wolfgang , Anders Simon . Title: Physiological and behavioural responses of the deep pelagic jellyfish Periphylla periphylla exposed to sediment plumes and increasing temperatures Identifier: https://doi.org/10.1594/PANGAEA.957367 Type: DOI Relation: References Year: 2023 Authors: Stenvers Vanessa , Hauss Helena , Bayer Till , Havermans Charlotte , Hentschel Ute , Schmittmann Lara , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Bryant Donald M , Johnson K , DiTommaso Tia , Tickle Timothy , Couger Matthew Brian , Paytin-Dogru Duygu , Lee Tae J , Leigh Nicholas D , Kuo Tzu-Hsing , Davis Francis G , Bateman Joel , Bryant Sevara , Guzikowski Anna R , Love Michael , Huber Wolfgang , Anders Simon . Title: A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors Identifier: https://doi.org/10.1016/j.celrep.2016.12.063 Type: DOI Relation: References Year: 2017 Authors: Stenvers Vanessa , Hauss Helena , Bayer Till , Havermans Charlotte , Hentschel Ute , Schmittmann Lara , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Bryant Donald M , Johnson K , DiTommaso Tia , Tickle Timothy , Couger Matthew Brian , Paytin-Dogru Duygu , Lee Tae J , Leigh Nicholas D , Kuo Tzu-Hsing , Davis Francis G , Bateman Joel , Bryant Sevara , Guzikowski Anna R , Love Michael , Huber Wolfgang , Anders Simon . Title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Identifier: https://doi.org/10.1186/s13059-014-0550-8 Type: DOI Relation: References Year: 2014 Source: Genome Biology Authors: Stenvers Vanessa , Hauss Helena , Bayer Till , Havermans Charlotte , Hentschel Ute , Schmittmann Lara , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Stenvers Vanessa , Hauss Helena , Schmittmann Lara , Bayer Till , Havermans Charlotte , Hentschel Ute , Sweetman Andrew K , Hoving Henk-Jan T , Bryant Donald M , Johnson K , DiTommaso Tia , Tickle Timothy , Couger Matthew Brian , Paytin-Dogru Duygu , Lee Tae J , Leigh Nicholas D , Kuo Tzu-Hsing , Davis Francis G , Bateman Joel , Bryant Sevara , Guzikowski Anna R , Love Michael , Huber Wolfgang , Anders Simon .