UniProt dataset

doi:doi:10.57702/8uwa3mwy

UniProt dataset

The UniProt dataset is a comprehensive protein dataset. We download reviewed protein sequences (550k) with the limitation of 100 in length as D_r (57k examples). Then we use a community reimplementation of AlphaFold to predict the secondary structure for D_r. After filtering some low-quality examples, we obtain D_s with 46k examples, including both sequence and secondary structure information.

BibTex:

@dataset{Huazhong_University_of_Science_and_Technology_and_University_of_California_Santa_Barbara_and_ByteDance_Research_2024,
    abstract = {The UniProt dataset is a comprehensive protein dataset. We download reviewed protein sequences (550k) with the limitation of 100 in length as D_r (57k examples). Then we use a community reimplementation of AlphaFold to predict the secondary structure for D_r. After filtering some low-quality examples, we obtain D_s with 46k examples, including both sequence and secondary structure information.},
    author = {Huazhong University of Science and Technology and University of California, Santa Barbara and ByteDance Research},
    doi = {10.57702/8uwa3mwy},
    institution = {No Organization},
    keyword = {'Protein Sequences', 'Secondary Structure Prediction', 'UniProt', 'function prediction', 'protein sequence'},
    month = {dec},
    publisher = {TIB},
    title = {UniProt dataset},
    url = {https://service.tib.eu/ldmservice/dataset/uniprot-dataset},
    year = {2024}
}