VADEERS dataset

doi:doi:10.57702/48y9aik0

VADEERS dataset

The dataset D = {XS, XI, XB, YR, (cid:126)yG} consists of five parts, where XS ∈ R304×300 denotes drugs’ SMILES vector representations, XI ∈ R117×294 denotes drugs’ inhibition proﬁles across a panel of protein kinases, XB ∈ R922×241 denotes a matrix of cell lines biological features, YR ∈ R922×304 denotes a matrix with drug response indicators for a given cell line c and drug d, and (cid:126)yG ∈ R117 denotes a vector of guiding labels for a subset of considered drugs.

BibTex:

@dataset{Krzysztof_Koras_and_Marcin_Mo˙zejko_and_Paulina_Szymczak_and_Eike_Staub_and_Ewa_Szczurek_2024,
    abstract = {The dataset D = {XS, XI, XB, YR, (cid:126)yG} consists of five parts, where XS ∈ R304×300 denotes drugs’ SMILES vector representations, XI ∈ R117×294 denotes drugs’ inhibition proﬁles across a panel of protein kinases, XB ∈ R922×241 denotes a matrix of cell lines biological features, YR ∈ R922×304 denotes a matrix with drug response indicators for a given cell line c and drug d, and (cid:126)yG ∈ R117 denotes a vector of guiding labels for a subset of considered drugs.},
    author = {Krzysztof Koras and Marcin Mo˙zejko and Paulina Szymczak and Eike Staub and Ewa Szczurek},
    doi = {10.57702/48y9aik0},
    institution = {No Organization},
    keyword = {'Cell lines', 'Drug response', 'Inhibition proﬁles', 'SMILES'},
    month = {dec},
    publisher = {TIB},
    title = {VADEERS dataset},
    url = {https://service.tib.eu/ldmservice/dataset/vadeers-dataset},
    year = {2024}
}