Changes

On December 2, 2024 at 11:50:00 PM UTC, admin:
Changed title to TCGA dataset (previously TCGA Dataset)
Set author of TCGA dataset to Cameron Dahan (previously Alex Markham)
Updated description of TCGA dataset from
The TCGA dataset is a collection of genomic data from cancer patients.
to
The dataset used in this paper is the TCGA dataset, which contains somatic genomic alterations (SGAs) and differentially expressed genes (DEGs) of 4,468 tumors.
Removed the following tags from TCGA dataset
- Genomic Data
- Cancer Research
Added the following tags to TCGA dataset
Changed value of field defined_in to https://doi.org/10.48550/arXiv.1902.00078 in TCGA dataset
Changed value of field extra_authors to [{'extra_author': 'Stergios Christodoulidis', 'orcid': ''}, {'extra_author': 'Maria Vakalopoulou', 'orcid': ''}, {'extra_author': 'Joseph Boyd', 'orcid': ''}] in TCGA dataset
Changed value of field citation to ['https://doi.org/10.48550/arXiv.2102.03014'] in TCGA dataset
Deleted resource Original Metadata from TCGA dataset
              
    
          
          
        
        
            f 1 { f 1 {
            2   "access_rights": "", 2   "access_rights": "",
            n 3   "author": "Alex Markham", n 3   "author": "Cameron Dahan",
            4   "author_email": "", 4   "author_email": "",
            n 5   "citation": [], n 5   "citation": [
            6     "https://doi.org/10.48550/arXiv.2102.03014"
            7   ],
            6   "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700", 8   "creator_user_id": "17755db4-395a-4b3b-ac09-e8e3484ca700",
            n 7   "defined_in": "", n 9   "defined_in": "https://doi.org/10.48550/arXiv.1902.00078",
            8   "doi": "10.57702/9lms2alj", 10   "doi": "10.57702/9lms2alj",
            9   "doi_date_published": "2024-12-02", 11   "doi_date_published": "2024-12-02",
            10   "doi_publisher": "TIB", 12   "doi_publisher": "TIB",
            11   "doi_status": true, 13   "doi_status": true,
            12   "domain": "https://service.tib.eu/ldmservice", 14   "domain": "https://service.tib.eu/ldmservice",
            13   "extra_authors": [ 15   "extra_authors": [
            14     { 16     {
            n 15       "extra_author": "Mingyu Liu", n 17       "extra_author": "Stergios Christodoulidis",
            16       "orcid": "" 18       "orcid": ""
            17     }, 19     },
            18     { 20     {
            n 19       "extra_author": "Bryon Aragam", n 21       "extra_author": "Maria Vakalopoulou",
            20       "orcid": "" 22       "orcid": ""
            21     }, 23     },
            22     { 24     {
            n 23       "extra_author": "Liam Solus", n 25       "extra_author": "Joseph Boyd",
            24       "orcid": "" 26       "orcid": ""
            25     } 27     }
            26   ], 28   ],
            27   "groups": [ 29   "groups": [
            28     { 30     {
            29       "description": "", 31       "description": "",
            n 30       "display_name": "Cancer Research", n 32       "display_name": "Artifacts",
            31       "id": "f703b1f1-6f78-408b-922a-6ef99197e120", 33       "id": "eb159167-d2f8-4edd-8f03-3d88960315c5",
            32       "image_display_url": "", 34       "image_display_url": "",
            n 33       "name": "cancer-research", n 35       "name": "artifacts",
            34       "title": "Cancer Research" 36       "title": "Artifacts"
            35     }, 37     },
            36     { 38     {
            37       "description": "", 39       "description": "",
            n 38       "display_name": "Genomics", n 40       "display_name": "Cancer Genomics",
            39       "id": "c546e88a-fdf6-4bd9-8814-46a9fa072156", 41       "id": "a372c368-4b28-462e-aa06-fca38730712f",
            40       "image_display_url": "", 42       "image_display_url": "",
            n 41       "name": "genomics", n 43       "name": "cancer-genomics",
            42       "title": "Genomics" 44       "title": "Cancer Genomics"
            45     },
            46     {
            47       "description": "",
            48       "display_name": "Genomic Alterations",
            49       "id": "1e88c917-c861-4ea1-a238-1aaa4267dc15",
            50       "image_display_url": "",
            51       "name": "genomic-alterations",
            52       "title": "Genomic Alterations"
            53     },
            54     {
            55       "description": "",
            56       "display_name": "Histopathology",
            57       "id": "82509a4f-474e-4d24-8f98-8a65caaa3b08",
            58       "image_display_url": "",
            59       "name": "histopathology",
            60       "title": "Histopathology"
            43     } 61     }
            44   ], 62   ],
            45   "id": "9ca6f002-cd80-4f54-8f27-6f1a3151cfa9", 63   "id": "9ca6f002-cd80-4f54-8f27-6f1a3151cfa9",
            46   "isopen": false, 64   "isopen": false,
            47   "landing_page": "https://www.cancer.gov/tcga", 65   "landing_page": "https://www.cancer.gov/tcga",
            48   "license_title": null, 66   "license_title": null,
            49   "link_orkg": "", 67   "link_orkg": "",
            50   "metadata_created": "2024-12-02T22:47:05.445595", 68   "metadata_created": "2024-12-02T22:47:05.445595",
            n 51   "metadata_modified": "2024-12-02T22:47:06.161650", n 69   "metadata_modified": "2024-12-02T23:49:59.743597",
            52   "name": "tcga-dataset", 70   "name": "tcga-dataset",
            n 53   "notes": "The TCGA dataset is a collection of genomic data from  n 71   "notes": "The dataset used in this paper is the TCGA dataset, which 
            54 cancer patients.", 72 contains somatic genomic alterations (SGAs) and differentially 
            73 expressed genes (DEGs) of 4,468 tumors.",
            55   "num_resources": 1, 74   "num_resources": 0,
            56   "num_tags": 2, 75   "num_tags": 8,
            57   "organization": { 76   "organization": {
            58     "approval_status": "approved", 77     "approval_status": "approved",
            59     "created": "2024-11-25T12:11:38.292601", 78     "created": "2024-11-25T12:11:38.292601",
            60     "description": "", 79     "description": "",
            61     "id": "079d46db-32df-4b48-91f3-0a8bc8f69559", 80     "id": "079d46db-32df-4b48-91f3-0a8bc8f69559",
            62     "image_url": "", 81     "image_url": "",
            63     "is_organization": true, 82     "is_organization": true,
            64     "name": "no-organization", 83     "name": "no-organization",
            65     "state": "active", 84     "state": "active",
            66     "title": "No Organization", 85     "title": "No Organization",
            67     "type": "organization" 86     "type": "organization"
            68   }, 87   },
            69   "owner_org": "079d46db-32df-4b48-91f3-0a8bc8f69559", 88   "owner_org": "079d46db-32df-4b48-91f3-0a8bc8f69559",
            70   "private": false, 89   "private": false,
            71   "relationships_as_object": [], 90   "relationships_as_object": [],
            72   "relationships_as_subject": [], 91   "relationships_as_subject": [],
            n 73   "resources": [ n 92   "resources": [],
            74     { 
            75       "cache_last_updated": null, 
            76       "cache_url": null, 
            77       "created": "2024-12-02T22:29:38", 
            78       "data": [ 
            79         "dcterms:title", 
            80         "dcterms:accessRights", 
            81         "dcterms:creator", 
            82         "dcterms:description", 
            83         "dcterms:issued", 
            84         "dcterms:language", 
            85         "dcterms:identifier", 
            86         "dcat:theme", 
            87         "dcterms:type", 
            88         "dcat:keyword", 
            89         "dcat:landingPage", 
            90         "dcterms:hasVersion", 
            91         "dcterms:format", 
            92         "mls:task" 
            93       ], 
            94       "description": "The json representation of the dataset with its  
            95 distributions based on DCAT.", 
            96       "format": "JSON", 
            97       "hash": "", 
            98       "id": "8ac0afa9-0077-4adc-84f4-f8ec8ae7817a", 
            99       "last_modified": "2024-12-02T22:47:06.154497", 
            100       "metadata_modified": "2024-12-02T22:47:06.164420", 
            101       "mimetype": "application/json", 
            102       "mimetype_inner": null, 
            103       "name": "Original Metadata", 
            104       "package_id": "9ca6f002-cd80-4f54-8f27-6f1a3151cfa9", 
            105       "position": 0, 
            106       "resource_type": null, 
            107       "size": 622, 
            108       "state": "active", 
            109       "url":  
            110 resource/8ac0afa9-0077-4adc-84f4-f8ec8ae7817a/download/metadata.json", 
            111       "url_type": "upload" 
            112     } 
            113   ], 
            114   "services_used_list": "", 93   "services_used_list": "",
            115   "state": "active", 94   "state": "active",
            116   "tags": [ 95   "tags": [
            117     { 96     {
            n 118       "display_name": "Cancer Research", n 97       "display_name": "Cancer Genomics",
            119       "id": "75249c8f-0791-4819-a6a3-ef77cb176638", 98       "id": "eed734bf-91a3-42ed-ab2f-d915e54c581d",
            120       "name": "Cancer Research", 99       "name": "Cancer Genomics",
            121       "state": "active", 100       "state": "active",
            122       "vocabulary_id": null 101       "vocabulary_id": null
            123     }, 102     },
            124     { 103     {
            n n 104       "display_name": "Differentially Expressed Genes",
            105       "id": "b7da6c40-5994-4a58-ba3e-016388850587",
            106       "name": "Differentially Expressed Genes",
            107       "state": "active",
            108       "vocabulary_id": null
            109     },
            110     {
            111       "display_name": "Multi-Omics Data Integration",
            112       "id": "cb799e77-f418-4d41-8857-26b79c0676b1",
            113       "name": "Multi-Omics Data Integration",
            114       "state": "active",
            115       "vocabulary_id": null
            116     },
            117     {
            118       "display_name": "Somatic Genomic Alterations",
            119       "id": "1a984b7f-56ef-4c29-8096-f8c96d93054a",
            120       "name": "Somatic Genomic Alterations",
            121       "state": "active",
            122       "vocabulary_id": null
            123     },
            124     {
            125       "display_name": "TCGA",
            126       "id": "fd74f999-f4cc-407b-8f7d-29eb14bdb14f",
            127       "name": "TCGA",
            128       "state": "active",
            129       "vocabulary_id": null
            130     },
            131     {
            125       "display_name": "Genomic Data", 132       "display_name": "artifacts",
            126       "id": "28e1406d-4b36-43a6-be6b-cf142a1eb022", 133       "id": "473f4739-4367-47a8-9d33-9ad93773c808",
            127       "name": "Genomic Data", 134       "name": "artifacts",
            135       "state": "active",
            136       "vocabulary_id": null
            137     },
            138     {
            139       "display_name": "histopathology",
            140       "id": "c5bd7bb7-4841-4397-ad31-22482121ef56",
            141       "name": "histopathology",
            142       "state": "active",
            143       "vocabulary_id": null
            144     },
            145     {
            146       "display_name": "pan-cancer",
            147       "id": "cb3ae634-6b39-4b15-a36c-d460350f84a1",
            148       "name": "pan-cancer",
            128       "state": "active", 149       "state": "active",
            129       "vocabulary_id": null 150       "vocabulary_id": null
            130     } 151     }
            131   ], 152   ],
            t 132   "title": "TCGA Dataset", t 153   "title": "TCGA dataset",
            133   "type": "dataset", 154   "type": "dataset",
            134   "version": "" 155   "version": ""
            135 } 156 }