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  "access_rights": "",
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  "access_rights": "",
            
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  "author": "Zhihan Zhou",
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  "author": "Zhihan Zhou",
            
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  "author_email": "",
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  "author_email": "",
            
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  "citation": [],
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  "defined_in": "https://doi.org/10.48550/arXiv.2402.08777",
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  "defined_in": "https://doi.org/10.48550/arXiv.2402.08777",
            
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  "doi": "10.57702/euv7e7ls",
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  "doi": "10.57702/euv7e7ls",
            
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  "doi_date_published": null,
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  "doi_date_published": "2024-12-03",
            
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  "doi_publisher": "TIB",
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  "doi_publisher": "TIB",
            
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  "extra_authors": [
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  "extra_authors": [
            
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    {
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    {
            
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      "extra_author": "Weimin Wu",
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      "extra_author": "Weimin Wu",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Harrison Ho",
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      "extra_author": "Harrison Ho",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Jiayi Wang",
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      "extra_author": "Jiayi Wang",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Lizhen Shi",
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      "extra_author": "Lizhen Shi",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Ramana V Davuluri",
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      "extra_author": "Ramana V Davuluri",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Zhong Wang",
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      "extra_author": "Zhong Wang",
            
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      "orcid": ""
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      "orcid": ""
            
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    },
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    },
            
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    {
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    {
            
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      "extra_author": "Han Liu",
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      "extra_author": "Han Liu",
            
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      "orcid": ""
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      "orcid": ""
            
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    }
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  ],
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      "description": "",
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      "name": "dna-embeddings",
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      "name": "dna-embeddings",
            
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      "title": "DNA Embeddings"
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      "title": "DNA Embeddings"
            
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      "title": "Genome Foundation Models"
            
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      "name": "metagenomics",
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  "name": 
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  "name": 
            
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--learning-species-aware-dna-embedding-with-genome-foundation-models",
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--learning-species-aware-dna-embedding-with-genome-foundation-models",
            
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  "notes": "DNABERT-S is a genome foundation model designed to 
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  "notes": "DNABERT-S is a genome foundation model designed to 
            
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generate effective, species-aware DNA embeddings. The model uses a 
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generate effective, species-aware DNA embeddings. The model uses a 
            
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combination of Manifold Instance Mixup and Curriculum Contrastive 
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combination of Manifold Instance Mixup and Curriculum Contrastive 
            
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Learning to learn species-aware embeddings.",
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Learning to learn species-aware embeddings.",
            
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  ],
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  "title": "DNABERT-S: LEARNING SPECIES-AWARE DNA EMBEDDING WITH 
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  "title": "DNABERT-S: LEARNING SPECIES-AWARE DNA EMBEDDING WITH 
            
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GENOME FOUNDATION MODELS",
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GENOME FOUNDATION MODELS",
            
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}
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}